Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq2 232 2e-55
>seq2
Length=16759152
Score = 232 bits (256), Expect = 2e-55
Identities = 531/788 (67%), Gaps = 15/788 (2%)
Strand=Plus/Plus
Query 268855 TCTT-GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913
|||| || || ||||| | | ||||||||| ||||| || ||| | || |||| || |
Sbjct 14764016 TCTTAGCTTTCTTTGCCGCTTCTGATGGTATTGTTAATGAGAATTTGGTCGAGAGATTTT 14764075
Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973
| |||| || || ||||| || || | | || || || ||||| || || || ||||
Sbjct 14764076 CTAAAGAAGTTCAAATTCCCGAGGCACGTTTCTTCTATGGTTTCCAAATTGCCATGGAAA 14764135
Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAA 269033
||||||| |||||||| | | || || || |||||| ||| || ||||||
Sbjct 14764136 ATATTCACAGTGAGATGTATTCAAAACTTATCGAAACCTATATACGTGACAATGACGAAA 14764195
Query 269034 AGAAAAGACTATTTTCTTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGG 269092
| | ||| ||| | || | || | | | | | | | ||||||||| |||| |||
Sbjct 14764196 GAATGAAACTTTTTAATGCTTTAGATGAGTTTCCATT-TATCAGAAAAAAAGCTGATTGG 14764254
Query 269093 GCTCTGAAATGGATAAACGATAGC---GCGCCTTACGGAGAAAG-GTTAGTTGCTTTTGC 269148
||| | | |||||| |||| || ||| |||||| | |||| ||||||||||
Sbjct 14764255 GCTTTAAGATGGATCGCTGATAAGAATGCTACTTTTGGAGAACGAGTTA-TTGCTTTTGC 14764313
Query 269149 CGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAG 269208
||||| |||||||| |||||||| || || ||||| | || |||||| |||||||| |
Sbjct 14764314 AGCTGTTGAAGGTATCTTCTTTTCTGGTTCATTTGCTTCCATATTTTGGCTGAAGAAACG 14764373
Query 269209 AGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268
|| | ||||||||||| || || || |||||||| || || || || |||||
Sbjct 14764374 TGGTTTGATGCCAGGATTGACACATTCCAATGAATTGATTTCAAGAGATGAGGGATTACA 14764433
Query 269269 CTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAG 269328
| | || ||||| || |||| | || ||| ||| | ||||||| ||| |||| |
Sbjct 14764434 CCGTGATTTCGCCTG--CCTTATGT-TTAGTTACCTTGAAAACAAACCATCTGAAGAACG 14764490
Query 269329 AGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCT 269388
|| | |||||||| | || ||| | | |||| |||| || || || |||||
Sbjct 14764491 TATAAAAGAAATTATTAAAAATGCAGTTGATATTGAAAAGGAATACCTTACAGATGCTCT 14764550
Query 269389 ATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATC 269448
|| | ||| | || || ||||| | ||| ||||||| | | ||| |
Sbjct 14764551 TCCTGTTGATATGATTGGAATGAACTCACGTTTAATGTGTACATATATTGAATATGTAGC 14764610
Query 269449 TGATAGATTGCTGGTG--TCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTT 269506
||| ||| ||||| ||| | ||| | ||| ||||| ||| | || || |||
Sbjct 14764611 TGACCATTTGTTGGTGGAACTTAATTGTTCA--AAACTTTATAATGTTAAGAACCCCTTT 14764668
Query 269507 AGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGT 269566
|||||||| ||||| ||| | || || || | |||||||| ||||| || |
Sbjct 14764669 GATTTTATGGTTAATATTTCAATTGAGGGAAAAACAAATTTCTTTGAGAAAAAAGTTTCT 14764728
Query 269567 AACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATTTTCACTACAGATGCA 269626
| ||||||||| | ||||| |||||||| | |||||| | |||| || |||||
Sbjct 14764729 GAATATCAGAAATTCGGTGTTATGTCTACAGATGAAGAACGTGTTTTTACATTGGATGCC 14764788
Query 269627 GAATTCTA 269634
|| |||||
Sbjct 14764789 GATTTCTA 14764796
Score = 196 bits (216), Expect = 1e-44
Identities = 171/213 (80%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || | ||| | || ||||| || || |||||||||||||| |||||||| || ||
Sbjct 10682726 AAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATC 10682667
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| |||||||||||||||||||||| || |||||||| ||||| ||||||||||| ||
Sbjct 10682666 TTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTC 10682607
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|||||||||| ||| ||||| || | ||| ||| ||||||||||| || || || ||
Sbjct 10682606 TTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATGGT 10682547
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| ||||| | || || || || ||||||||
Sbjct 10682546 CTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514
Score = 181 bits (200), Expect = 2e-40
Identities = 168/213 (79%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || | ||| | || ||||| || || |||||||||||||| |||||||| || ||
Sbjct 10681814 AAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATC 10681755
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||
Sbjct 10681754 TTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTC 10681695
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|||||||||| || ||||| || | || ||| ||| |||||||| || || |||||
Sbjct 10681694 TTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGT 10681635
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || | || || || || || |||||
Sbjct 10681634 TTTGCCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602
Score = 178 bits (196), Expect = 3e-39
Identities = 167/213 (78%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || | ||| | ||||||||||| || ||||| |||||||| |||||||| || ||
Sbjct 10682270 AAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATC 10682211
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| ||||||||||| ||||| || | || |||||||| || || |||||||| |||||
Sbjct 10682210 TTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATC 10682151
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||| |||| ||| ||||| || | ||| ||| |||||||| || || ||||||||
Sbjct 10682150 TTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGT 10682091
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| || || | || || ||||| || |||||
Sbjct 10682090 CTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058
Score = 178 bits (196), Expect = 3e-39
Identities = 167/213 (78%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| |||| || | || || ||||| || ||||| || ||||| |||||||| || ||
Sbjct 10682954 AAGAACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATC 10682895
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| |||||||||||||||||||||| || ||||| || ||||| |||||||| |||||
Sbjct 10682894 TTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATC 10682835
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|| ||||||| ||| ||||| || | ||| || |||||| || || || ||||||||
Sbjct 10682834 TTGGATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGT 10682775
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || | || || ||||| ||||||||
Sbjct 10682774 TTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742
Score = 178 bits (196), Expect = 3e-39
Identities = 167/213 (78%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || | ||| | || ||||| || || |||||||||||||| |||||||| || ||
Sbjct 10683182 AAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATC 10683123
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| ||||||||||| ||||| || | || |||||||| ||||| |||||||| || ||
Sbjct 10683122 TTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTC 10683063
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|||||||||| ||| ||||| || | ||| ||| |||||||| || || ||||||||
Sbjct 10683062 TTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGT 10683003
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| || || | || || ||||| || |||||
Sbjct 10683002 CTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970
Score = 159 bits (176), Expect = 8e-34
Identities = 163/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| |||| || | || || ||||| ||||| || || ||||| ||||| || || ||
Sbjct 10682042 AAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATC 10681983
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| |||||||||||||||||||||| || ||||| || ||||| |||||||| |||||
Sbjct 10681982 TTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATC 10681923
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||| |||| ||| || || || | || || ||||| || || || ||||||||
Sbjct 10681922 TTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGT 10681863
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || | || || ||||| ||||||||
Sbjct 10681862 TTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830
Score = 159 bits (176), Expect = 8e-34
Identities = 163/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| |||| || | || || || || || ||||| |||||||| |||||||| || ||
Sbjct 10682498 AAGAACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATC 10682439
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| ||||||||||| ||||| |||| || |||||||| ||||| |||||||| |||||
Sbjct 10682438 TTCAAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATC 10682379
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|||||||||| || || || || | || || ||||| || || || ||||||||
Sbjct 10682378 TTGAATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGT 10682319
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || | || || ||||| ||||||||
Sbjct 10682318 TTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682286
Score = 118 bits (130), Expect = 2e-21
Identities = 115/148 (78%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| |||||||| || | ||||| || || || ||||||||||| || ||||| || |||
Sbjct 15965447 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCT 15965388
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||| || || || ||||| || || || ||||||||||||||
Sbjct 15965387 TTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAAGA 15965328
Query 104540 GTTTTTACAAATATCTGCATTTTGTGTA 104567
|| || || || |||||||||| || ||
Sbjct 15965327 GTCTTAACGAAAATCTGCATTTCGTCTA 15965300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151396408440580
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |