Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 232 2e-55 >seq2 Length=16759152 Score = 232 bits (256), Expect = 2e-55 Identities = 531/788 (67%), Gaps = 15/788 (2%) Strand=Plus/Plus Query 268855 TCTT-GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913 |||| || || ||||| | | ||||||||| ||||| || ||| | || |||| || | Sbjct 14764016 TCTTAGCTTTCTTTGCCGCTTCTGATGGTATTGTTAATGAGAATTTGGTCGAGAGATTTT 14764075 Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973 | |||| || || ||||| || || | | || || || ||||| || || || |||| Sbjct 14764076 CTAAAGAAGTTCAAATTCCCGAGGCACGTTTCTTCTATGGTTTCCAAATTGCCATGGAAA 14764135 Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAA 269033 ||||||| |||||||| | | || || || |||||| ||| || |||||| Sbjct 14764136 ATATTCACAGTGAGATGTATTCAAAACTTATCGAAACCTATATACGTGACAATGACGAAA 14764195 Query 269034 AGAAAAGACTATTTTCTTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGG 269092 | | ||| ||| | || | || | | | | | | | ||||||||| |||| ||| Sbjct 14764196 GAATGAAACTTTTTAATGCTTTAGATGAGTTTCCATT-TATCAGAAAAAAAGCTGATTGG 14764254 Query 269093 GCTCTGAAATGGATAAACGATAGC---GCGCCTTACGGAGAAAG-GTTAGTTGCTTTTGC 269148 ||| | | |||||| |||| || ||| |||||| | |||| |||||||||| Sbjct 14764255 GCTTTAAGATGGATCGCTGATAAGAATGCTACTTTTGGAGAACGAGTTA-TTGCTTTTGC 14764313 Query 269149 CGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAG 269208 ||||| |||||||| |||||||| || || ||||| | || |||||| |||||||| | Sbjct 14764314 AGCTGTTGAAGGTATCTTCTTTTCTGGTTCATTTGCTTCCATATTTTGGCTGAAGAAACG 14764373 Query 269209 AGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 || | ||||||||||| || || || |||||||| || || || || ||||| Sbjct 14764374 TGGTTTGATGCCAGGATTGACACATTCCAATGAATTGATTTCAAGAGATGAGGGATTACA 14764433 Query 269269 CTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAG 269328 | | || ||||| || |||| | || ||| ||| | ||||||| ||| |||| | Sbjct 14764434 CCGTGATTTCGCCTG--CCTTATGT-TTAGTTACCTTGAAAACAAACCATCTGAAGAACG 14764490 Query 269329 AGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCT 269388 || | |||||||| | || ||| | | |||| |||| || || || ||||| Sbjct 14764491 TATAAAAGAAATTATTAAAAATGCAGTTGATATTGAAAAGGAATACCTTACAGATGCTCT 14764550 Query 269389 ATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATC 269448 || | ||| | || || ||||| | ||| ||||||| | | ||| | Sbjct 14764551 TCCTGTTGATATGATTGGAATGAACTCACGTTTAATGTGTACATATATTGAATATGTAGC 14764610 Query 269449 TGATAGATTGCTGGTG--TCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTT 269506 ||| ||| ||||| ||| | ||| | ||| ||||| ||| | || || ||| Sbjct 14764611 TGACCATTTGTTGGTGGAACTTAATTGTTCA--AAACTTTATAATGTTAAGAACCCCTTT 14764668 Query 269507 AGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGT 269566 |||||||| ||||| ||| | || || || | |||||||| ||||| || | Sbjct 14764669 GATTTTATGGTTAATATTTCAATTGAGGGAAAAACAAATTTCTTTGAGAAAAAAGTTTCT 14764728 Query 269567 AACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATTTTCACTACAGATGCA 269626 | ||||||||| | ||||| |||||||| | |||||| | |||| || ||||| Sbjct 14764729 GAATATCAGAAATTCGGTGTTATGTCTACAGATGAAGAACGTGTTTTTACATTGGATGCC 14764788 Query 269627 GAATTCTA 269634 || ||||| Sbjct 14764789 GATTTCTA 14764796 Score = 196 bits (216), Expect = 1e-44 Identities = 171/213 (80%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | || ||||| || || |||||||||||||| |||||||| || || Sbjct 10682726 AAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATC 10682667 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||||||||||||||||| || |||||||| ||||| ||||||||||| || Sbjct 10682666 TTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTC 10682607 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| ||| ||||| || | ||| ||| ||||||||||| || || || || Sbjct 10682606 TTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATGGT 10682547 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| | || || || || |||||||| Sbjct 10682546 CTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514 Score = 181 bits (200), Expect = 2e-40 Identities = 168/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | || ||||| || || |||||||||||||| |||||||| || || Sbjct 10681814 AAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATC 10681755 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || Sbjct 10681754 TTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTC 10681695 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| || ||||| || | || ||| ||| |||||||| || || ||||| Sbjct 10681694 TTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGT 10681635 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | || || || || || ||||| Sbjct 10681634 TTTGCCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602 Score = 178 bits (196), Expect = 3e-39 Identities = 167/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | ||||||||||| || ||||| |||||||| |||||||| || || Sbjct 10682270 AAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATC 10682211 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||||||||| ||||| || | || |||||||| || || |||||||| ||||| Sbjct 10682210 TTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATC 10682151 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||| |||| ||| ||||| || | ||| ||| |||||||| || || |||||||| Sbjct 10682150 TTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGT 10682091 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | || || ||||| || ||||| Sbjct 10682090 CTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058 Score = 178 bits (196), Expect = 3e-39 Identities = 167/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||| || | || || ||||| || ||||| || ||||| |||||||| || || Sbjct 10682954 AAGAACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATC 10682895 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||||||||||||||||| || ||||| || ||||| |||||||| ||||| Sbjct 10682894 TTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATC 10682835 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||||| ||| ||||| || | ||| || |||||| || || || |||||||| Sbjct 10682834 TTGGATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGT 10682775 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || | || || ||||| |||||||| Sbjct 10682774 TTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742 Score = 178 bits (196), Expect = 3e-39 Identities = 167/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | || ||||| || || |||||||||||||| |||||||| || || Sbjct 10683182 AAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATC 10683123 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||||||||| ||||| || | || |||||||| ||||| |||||||| || || Sbjct 10683122 TTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTC 10683063 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| ||| ||||| || | ||| ||| |||||||| || || |||||||| Sbjct 10683062 TTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGT 10683003 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | || || ||||| || ||||| Sbjct 10683002 CTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||| || | || || ||||| ||||| || || ||||| ||||| || || || Sbjct 10682042 AAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATC 10681983 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||||||||||||||||| || ||||| || ||||| |||||||| ||||| Sbjct 10681982 TTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATC 10681923 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||| |||| ||| || || || | || || ||||| || || || |||||||| Sbjct 10681922 TTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGT 10681863 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || | || || ||||| |||||||| Sbjct 10681862 TTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||| || | || || || || || ||||| |||||||| |||||||| || || Sbjct 10682498 AAGAACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATC 10682439 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||||||||| ||||| |||| || |||||||| ||||| |||||||| ||||| Sbjct 10682438 TTCAAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATC 10682379 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| || || || || | || || ||||| || || || |||||||| Sbjct 10682378 TTGAATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGT 10682319 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || | || || ||||| |||||||| Sbjct 10682318 TTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682286 Score = 118 bits (130), Expect = 2e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || | ||||| || || || ||||||||||| || ||||| || ||| Sbjct 15965447 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCT 15965388 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||| || || || ||||| || || || |||||||||||||| Sbjct 15965387 TTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAAGA 15965328 Query 104540 GTTTTTACAAATATCTGCATTTTGTGTA 104567 || || || || |||||||||| || || Sbjct 15965327 GTCTTAACGAAAATCTGCATTTCGTCTA 15965300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396408440580