Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq2 268 1e-66
>seq2
Length=16759152
Score = 268 bits (296), Expect = 1e-66
Identities = 517/756 (68%), Gaps = 34/756 (4%)
Strand=Plus/Plus
Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452
||||| |||||||| |||||| | ||||| ||||| |||||||||| || || |
Sbjct 490028 ATTGGGATTTTGAAAGTATGGGAATTGGTGGTTTAGATAAAGAATTTTCTGCCATCTTTA 490087
Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512
|| |||||||| | ||||| | |||| ||| | | || |||||||| ||||
Sbjct 490088 GAAGAGCATTTTTTAGTAGATTATTTCCACCTGAACAAGTTGAACAATTAGGCATGAAAC 490147
Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572
| | || |||||| | ||||||| |||||| |||||||| ||||| || ||
Sbjct 490148 ACGTTCGTGGTATTTTACTTTATGGACCACCTGGTACTGGTAAAACTTTAATAGCCCGTC 490207
Query 164573 GCATTGCTCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629
|| | || | |||||| | || || ||||||||| ||||| || || | |
Sbjct 490208 AAATAGGAAAAA-TGTTAAATGCTAGAGAACC--TAAAATTGTAAATGGACCACAAATTT 490264
Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689
| | |||||||| ||||| ||||||||| | ||||| || ||| || |||||||
Sbjct 490265 TAGATAAATATGTTGGTGAAAGTGAAGCTAATATAAGAAAATTATTTGGTGATGCTGAAG 490324
Query 164690 AAGAAC--AAAAGA-----AAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGAT 164742
||||| |||||| || | || |||| |||||| | ||| ||||||||
Sbjct 490325 AAGAATTTAAAAGATGTGGAAATAA-TTCAGCT------TTACATATAATTATTTTTGAT 490377
Query 164743 GAGATAGATGCTCTTTGCAAAAAACGTGG---------TGATAAT---ATTATTCATGAT 164790
|| || |||||| |||| ||| || | || || | | | | ||||||||
Sbjct 490378 GAAATTGATGCTATTTGTAAACAAAGAGGAACTCAAGCTGGAAGTTCCAGTGTTCATGAT 490437
Query 164791 GCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTA 164850
| || |||||||| | | | ||||| |||||||| || |||||||||||||||
Sbjct 490438 ACTGTAGTTAATCAAATTTTGACAAAAATGGATGGTGTTGATCAATTAAATAATATTTTA 490497
Query 164851 ATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGA 164910
|| | |||||||| || || ||| | |||||||| ||||| ||| |||| || ||
Sbjct 490498 GTTATTGGTATGACAAATAGAAAAGATATGATTGATGAAGCTTTGTTAAGACCAGGAAGA 490557
Query 164911 TTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAA 164970
| ||| | |||| ||||| ||||| || || | ||||| | ||||||||| |
Sbjct 490558 ATGGAAGTTCAAATGGAAATTTCTTTACCAGATGAAAATGGACGTGTACAAATTTTACAC 490617
Query 164971 GTTCATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAA 165030
|||| |||||||||| | | | ||| |||| || ||||| ||| | || |
Sbjct 490618 ATTCACACAGCTAAAATGAGAGAATATAATAAATTAGGACCTGATGTTGATATTAAAGCA 490677
Query 165031 ATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGCT 165090
|| ||| |||||||||||| | |||||||||| | || || || ||| | || |||
Sbjct 490678 ATTGCTAAGAAAACTAAAAATTTTTCTGGTGCTGAAATTGAAGGTTTGGTACGCGCAGCT 490737
Query 165091 CAATCAACCGC-ATTAAGTCGATGTGTTAAAGTAGA 165125
||||||| || ||||| | ||| || ||||| ||
Sbjct 490738 CAATCAAGTGCTATTAA-TAGATTAGTAAAAGTTGA 490772
Score = 150 bits (166), Expect = 2e-31
Identities = 313/460 (68%), Gaps = 22/460 (5%)
Strand=Plus/Plus
Query 6802 CGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGC 6861
||||||||||| ||| | || | || |||| | || |||||||||||||| |
Sbjct 13735804 CGAGTTAATTGAAGTTTAAGTGCATCAATGTGATTTTTGTATATATGAGCATCTCCAATA 13735863
Query 6862 GTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAAT 6921
|| |||| ||||||||||| || || | ||| ||||| | || ||||| |
Sbjct 13735864 GTGTGAACAAATTCACCTGTAGCTATTCCACAAACTTTTGCAATCATATGAGTTAAAAGA 13735923
Query 6922 GCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACAT 6981
| || ||||| | ||||| || ||||| | || | ||| | | |||||| |
Sbjct 13735924 GAGTATGAAGCAATGTTAAATGGAACACCAAGACCAACATCCCCACTACGTTGATACAAA 13735983
Query 6982 TGACAAGATAAAATATTGTCTAT----AGCATAAAATTGACACAATACATGACATGGAGG 7037
|| ||| ||| || || || | ||||||||||| || ||||||||||||
Sbjct 13735984 TGGCAACTTAA----TTCTCCATCTTGAACATAAAATTGAGCTAAAGTATGACATGGAGG 13736039
Query 7038 TAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATT 7097
||||| | ||| | ||||||||||||||| |||| | | ||| | ||| |
Sbjct 13736040 CAAAACCATTTTATCAAGATCAGATGGATTCCATGCAGATAAAATAATTCTTCTTGAAAA 13736099
Query 7098 TGGATTTGTTTTTAATTTTGTTATAATTATTTGT---AATTGATCTATACCCTGACCTTC 7154
||||| || |||| |||| | ||||| ||| |||||||| || || | ||||
Sbjct 13736100 AGGATTGGTCTTTA--TTTGATC-AATTACTTGGGCCAATTGATCAATTCCTTCACCTCT 13736156
Query 7155 ATAATTAGTATGACAA----TTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCAT 7210
||||| | | ||| ||| ||| ||||||||||||||||||||||||| ||||
Sbjct 13736157 ATAATCGGCGT--CAACGCCTTTGTATG--TAGCTCCAAAATGTCTCCATTGAAAACCAT 13736212
Query 7211 AAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCC 7250
||| ||| || ||||| ||||||| | | | |||||||
Sbjct 13736213 AAACAGGTCCCAAATCGCCTTCTTGTCTTTCAGTAAATCC 13736252
Score = 107 bits (118), Expect = 2e-18
Identities = 165/229 (72%), Gaps = 10/229 (4%)
Strand=Plus/Plus
Query 19358 CCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATT 19417
||| |||| || || || || ||||| || |||||||| ||| || |||||
Sbjct 8582015 CCTCAAATTGGAGACAAATTCGCTTCAAGACATGGACAAAAAGGTACAATGGGAATGATG 8582074
Query 19418 TATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGT-GCCGGATCTTATTATTAA 19476
|||||||||||||||||||||||||| ||||| || || || || || | ||||||||
Sbjct 8582075 TATCGTCAAGAAGATATGCCTTTTACAAAAGAAGG-ATTGTCTCCAGACATCATTATTAA 8582133
Query 19477 CCCACATGCTTTTCCAAGTCGAATGACGCTTAATTATATATTACAAATGTGTT-ATGG-- 19533
|| ||||| ||||| ||| ||||| || | || || | ||||| || | ||
Sbjct 8582134 TCCTCATGCCGTTCCATCTCGTATGACAATTGGTCATTTAAT-TGAATGTCTTCAAGGAA 8582192
Query 19534 -TTTAGCGGCTTGTAAAACAGGAAAAATTTATGATGCTACTCCTTTTAA 19581
||| | |||||||| |||| ||||| ||||||||| || |||||
Sbjct 8582193 AGTTATCAGCTTGTAA---AGGAGAAATTGGTGATGCTACACCATTTAA 8582238
Score = 91.5 bits (100), Expect = 2e-13
Identities = 129/179 (72%), Gaps = 2/179 (1%)
Strand=Plus/Minus
Query 19326 TAGTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTT 19385
|| |||| ||| | |||||| ||| || ||| || |||||||||| ||| | |
Sbjct 5489042 TAATTAAGATTCAGTTAAGACAGACTAGAAGACCAGAGTTAGGTGATAAATTTAGTAGTA 5488983
Query 19386 TTACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTA 19445
|| |||||||| |||||| | || | || ||||||||||||||| |||| |
Sbjct 5488982 GACATGGACAAAAAGGAGTATGTGGATTAATATCTCCTCAAGAAGATATGCCATTTAATG 5488923
Query 19446 AAGATGGTATAGTG-CCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503
| |||||| ||| || ||| ||||||| || || |||| || ||||||||| |||||
Sbjct 5488922 ATCTTGGTAT-GTGTCCTGATGTTATTATGAATCCTCATGGTTATCCAAGTCGTATGAC 5488865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595870994466000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |