Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq2 268 1e-66 >seq2 Length=16759152 Score = 268 bits (296), Expect = 1e-66 Identities = 517/756 (68%), Gaps = 34/756 (4%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||||||| |||||| | ||||| ||||| |||||||||| || || | Sbjct 490028 ATTGGGATTTTGAAAGTATGGGAATTGGTGGTTTAGATAAAGAATTTTCTGCCATCTTTA 490087 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 || |||||||| | ||||| | |||| ||| | | || |||||||| |||| Sbjct 490088 GAAGAGCATTTTTTAGTAGATTATTTCCACCTGAACAAGTTGAACAATTAGGCATGAAAC 490147 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 | | || |||||| | ||||||| |||||| |||||||| ||||| || || Sbjct 490148 ACGTTCGTGGTATTTTACTTTATGGACCACCTGGTACTGGTAAAACTTTAATAGCCCGTC 490207 Query 164573 GCATTGCTCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | || | |||||| | || || ||||||||| ||||| || || | | Sbjct 490208 AAATAGGAAAAA-TGTTAAATGCTAGAGAACC--TAAAATTGTAAATGGACCACAAATTT 490264 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | | |||||||| ||||| ||||||||| | ||||| || ||| || ||||||| Sbjct 490265 TAGATAAATATGTTGGTGAAAGTGAAGCTAATATAAGAAAATTATTTGGTGATGCTGAAG 490324 Query 164690 AAGAAC--AAAAGA-----AAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGAT 164742 ||||| |||||| || | || |||| |||||| | ||| |||||||| Sbjct 490325 AAGAATTTAAAAGATGTGGAAATAA-TTCAGCT------TTACATATAATTATTTTTGAT 490377 Query 164743 GAGATAGATGCTCTTTGCAAAAAACGTGG---------TGATAAT---ATTATTCATGAT 164790 || || |||||| |||| ||| || | || || | | | | |||||||| Sbjct 490378 GAAATTGATGCTATTTGTAAACAAAGAGGAACTCAAGCTGGAAGTTCCAGTGTTCATGAT 490437 Query 164791 GCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTA 164850 | || |||||||| | | | ||||| |||||||| || ||||||||||||||| Sbjct 490438 ACTGTAGTTAATCAAATTTTGACAAAAATGGATGGTGTTGATCAATTAAATAATATTTTA 490497 Query 164851 ATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGA 164910 || | |||||||| || || ||| | |||||||| ||||| ||| |||| || || Sbjct 490498 GTTATTGGTATGACAAATAGAAAAGATATGATTGATGAAGCTTTGTTAAGACCAGGAAGA 490557 Query 164911 TTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAA 164970 | ||| | |||| ||||| ||||| || || | ||||| | ||||||||| | Sbjct 490558 ATGGAAGTTCAAATGGAAATTTCTTTACCAGATGAAAATGGACGTGTACAAATTTTACAC 490617 Query 164971 GTTCATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAA 165030 |||| |||||||||| | | | ||| |||| || ||||| ||| | || | Sbjct 490618 ATTCACACAGCTAAAATGAGAGAATATAATAAATTAGGACCTGATGTTGATATTAAAGCA 490677 Query 165031 ATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGCT 165090 || ||| |||||||||||| | |||||||||| | || || || ||| | || ||| Sbjct 490678 ATTGCTAAGAAAACTAAAAATTTTTCTGGTGCTGAAATTGAAGGTTTGGTACGCGCAGCT 490737 Query 165091 CAATCAACCGC-ATTAAGTCGATGTGTTAAAGTAGA 165125 ||||||| || ||||| | ||| || ||||| || Sbjct 490738 CAATCAAGTGCTATTAA-TAGATTAGTAAAAGTTGA 490772 Score = 150 bits (166), Expect = 2e-31 Identities = 313/460 (68%), Gaps = 22/460 (5%) Strand=Plus/Plus Query 6802 CGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGC 6861 ||||||||||| ||| | || | || |||| | || |||||||||||||| | Sbjct 13735804 CGAGTTAATTGAAGTTTAAGTGCATCAATGTGATTTTTGTATATATGAGCATCTCCAATA 13735863 Query 6862 GTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAAT 6921 || |||| ||||||||||| || || | ||| ||||| | || ||||| | Sbjct 13735864 GTGTGAACAAATTCACCTGTAGCTATTCCACAAACTTTTGCAATCATATGAGTTAAAAGA 13735923 Query 6922 GCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACAT 6981 | || ||||| | ||||| || ||||| | || | ||| | | |||||| | Sbjct 13735924 GAGTATGAAGCAATGTTAAATGGAACACCAAGACCAACATCCCCACTACGTTGATACAAA 13735983 Query 6982 TGACAAGATAAAATATTGTCTAT----AGCATAAAATTGACACAATACATGACATGGAGG 7037 || ||| ||| || || || | ||||||||||| || |||||||||||| Sbjct 13735984 TGGCAACTTAA----TTCTCCATCTTGAACATAAAATTGAGCTAAAGTATGACATGGAGG 13736039 Query 7038 TAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATT 7097 ||||| | ||| | ||||||||||||||| |||| | | ||| | ||| | Sbjct 13736040 CAAAACCATTTTATCAAGATCAGATGGATTCCATGCAGATAAAATAATTCTTCTTGAAAA 13736099 Query 7098 TGGATTTGTTTTTAATTTTGTTATAATTATTTGT---AATTGATCTATACCCTGACCTTC 7154 ||||| || |||| |||| | ||||| ||| |||||||| || || | |||| Sbjct 13736100 AGGATTGGTCTTTA--TTTGATC-AATTACTTGGGCCAATTGATCAATTCCTTCACCTCT 13736156 Query 7155 ATAATTAGTATGACAA----TTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCAT 7210 ||||| | | ||| ||| ||| ||||||||||||||||||||||||| |||| Sbjct 13736157 ATAATCGGCGT--CAACGCCTTTGTATG--TAGCTCCAAAATGTCTCCATTGAAAACCAT 13736212 Query 7211 AAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCC 7250 ||| ||| || ||||| ||||||| | | | ||||||| Sbjct 13736213 AAACAGGTCCCAAATCGCCTTCTTGTCTTTCAGTAAATCC 13736252 Score = 107 bits (118), Expect = 2e-18 Identities = 165/229 (72%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 19358 CCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATT 19417 ||| |||| || || || || ||||| || |||||||| ||| || ||||| Sbjct 8582015 CCTCAAATTGGAGACAAATTCGCTTCAAGACATGGACAAAAAGGTACAATGGGAATGATG 8582074 Query 19418 TATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGT-GCCGGATCTTATTATTAA 19476 |||||||||||||||||||||||||| ||||| || || || || || | |||||||| Sbjct 8582075 TATCGTCAAGAAGATATGCCTTTTACAAAAGAAGG-ATTGTCTCCAGACATCATTATTAA 8582133 Query 19477 CCCACATGCTTTTCCAAGTCGAATGACGCTTAATTATATATTACAAATGTGTT-ATGG-- 19533 || ||||| ||||| ||| ||||| || | || || | ||||| || | || Sbjct 8582134 TCCTCATGCCGTTCCATCTCGTATGACAATTGGTCATTTAAT-TGAATGTCTTCAAGGAA 8582192 Query 19534 -TTTAGCGGCTTGTAAAACAGGAAAAATTTATGATGCTACTCCTTTTAA 19581 ||| | |||||||| |||| ||||| ||||||||| || ||||| Sbjct 8582193 AGTTATCAGCTTGTAA---AGGAGAAATTGGTGATGCTACACCATTTAA 8582238 Score = 91.5 bits (100), Expect = 2e-13 Identities = 129/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 19326 TAGTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTT 19385 || |||| ||| | |||||| ||| || ||| || |||||||||| ||| | | Sbjct 5489042 TAATTAAGATTCAGTTAAGACAGACTAGAAGACCAGAGTTAGGTGATAAATTTAGTAGTA 5488983 Query 19386 TTACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTA 19445 || |||||||| |||||| | || | || ||||||||||||||| |||| | Sbjct 5488982 GACATGGACAAAAAGGAGTATGTGGATTAATATCTCCTCAAGAAGATATGCCATTTAATG 5488923 Query 19446 AAGATGGTATAGTG-CCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 | |||||| ||| || ||| ||||||| || || |||| || ||||||||| ||||| Sbjct 5488922 ATCTTGGTAT-GTGTCCTGATGTTATTATGAATCCTCATGGTTATCCAAGTCGTATGAC 5488865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595870994466000