Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq2 129 5e-25
>seq2
Length=16759152
Score = 129 bits (142), Expect = 5e-25
Identities = 157/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
||||| || | ||| ||||||||||| | ||||| || | ||| | ||| ||
Sbjct 10681810 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10681751
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|| |||||||| |||| |||||||| || |||||||||||||| ||||||||||| | |
Sbjct 10681750 AGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 10681691
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| |||| |||||| | | | |||||| | | || || |||| ||||| |||||
Sbjct 10681690 ATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTTG 10681631
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGCTTA 95012
|| || | ||| || || || || |||||| |||
Sbjct 10681630 CCTGTCAAAGTCTTAACGAAAATTTGCATGGTTA 10681597
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
||||| || | ||| ||||||||||| | ||||| || | ||| | ||| ||
Sbjct 10682722 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10682663
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|| |||||||| |||| ||||||||||| |||||||||||||| ||||||||||| | |
Sbjct 10682662 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 10682603
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| |||| || || | ||| ||||| | | || || || | |||||||| |||
Sbjct 10682602 ATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATGGTCTTT 10682543
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| | ||| || || || ||||||||
Sbjct 10682542 CCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|| ||||| | ||| || |||||||| | || || || | ||| | ||| ||
Sbjct 10682494 ACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCA 10682435
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|| ||||||||| |||||||||||||||| |||||||||||||| ||||| || || | |
Sbjct 10682434 AGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGA 10682375
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| |||| ||| ||| | | | |||||||| | || || |||| || || |||||
Sbjct 10682374 ATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTA 10682315
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || | || || ||||| ||||||||
Sbjct 10682314 CCTGTTAAGGTCTTAACAAAAATCTGCAT 10682286
Score = 122 bits (134), Expect = 8e-23
Identities = 171/240 (71%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| ||| || ||||| | | || | || ||||| | ||| || || ||||| |
Sbjct 10682069 AAAAATTTGCATACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAAT 10682010
Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887
||| ||||| | ||| | ||| || || |||||||| |||| |||||||||||
Sbjct 10682009 GTTGTAATCAGAAAGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTG 10681950
Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947
|| |||||||| || ||||| || || | |||||||| |||||| | ||| ||||||
Sbjct 10681949 TTGGTCTGGAGGGATTCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTC 10681890
Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | || || |||| || || ||||| || || | || || ||||| ||||||||
Sbjct 10681889 AGATGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
||||| || | ||| ||||||||||| | ||||| || | ||| | ||| ||
Sbjct 10683178 ACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10683119
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|| ||||||||| ||||||| |||||||| |||||||||||||| ||||| ||||| | |
Sbjct 10683118 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGA 10683059
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| |||| || || | ||| ||||| | | || || |||| || || || |||
Sbjct 10683058 ATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTTT 10682999
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || | ||| || ||||| || |||||
Sbjct 10682998 CCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970
Score = 114 bits (126), Expect = 1e-20
Identities = 153/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856
||||| || | ||| || || ||||| | ||| ||||| | |||||| |||||
Sbjct 10683406 ACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAG--AAAGTGTTCTTCCATCCT 10683349
Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916
| || || |||||| |||| ||||||||||| ||||||||||| || ||||| || || |
Sbjct 10683348 CAAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTATCTT 10683289
Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976
||| |||| ||||| | | |||||||| | || || |||| || |||||||
Sbjct 10683288 GAATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTT 10683229
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || || | || || ||||| ||||||||
Sbjct 10683228 TACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198
Score = 100 bits (110), Expect = 3e-16
Identities = 166/240 (69%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| ||| || ||||| | | || | || ||||| | ||| || || ||||| |
Sbjct 10682981 AAAAATTTGCATACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGGAT 10682922
Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887
|| ||||| | ||| | ||| || || |||||||| |||| |||||||||||
Sbjct 10682921 ATTGTAATCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTG 10682862
Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947
|| ||||||||||| ||||| || || | || |||| ||||| | | | |||||
Sbjct 10682861 TTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTTGATTTGACATTGTCAATGGTGTC 10682802
Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | || || |||| || || ||||| || || | || || ||||| ||||||||
Sbjct 10682801 AGAAGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927
||| |||| || | | ||| || ||||| || || ||||||||||| | |||||| ||
Sbjct 15965447 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCT 15965388
Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987
|| || ||| ||||| | | ||||| |||| |||||||| || |||||||||
Sbjct 15965387 TTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAAGA 15965328
Query 94988 GTTTTCACAAAGATCTGCAT 95007
|| || || || ||||||||
Sbjct 15965327 GTCTTAACGAAAATCTGCAT 15965308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448290443508600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |