Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 159 5e-35 seq2 154 2e-33 seq3 134 2e-27 >seq1 Length=11693564 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | |||||| |||||||| |||||||||||||||||||||||| Sbjct 3058476 GCAAAACGCCATCGTAAAGTTCTTCGTGATAACATTCAAGGAATCACCAAGCCAGCTATC 3058417 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| | || || || || ||| |||||||| | |||||||||| | Sbjct 3058416 CGTCGTCTTGCTCGCAGAGGAGGTGTTAAACGTATCTCTGGACTTATCTATGAAGAAACC 3058357 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 ||| |||| | || |||| | | | |||||| | ||||||| || ||| || Sbjct 3058356 CGTACTGTTCTTAAATCCTTCTTGGAAAACGTTATTCGTGATGCTGTCACATATTGTGAA 3058297 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | || || || ||| | |||||| | |||||||| | ||| | ||||| Sbjct 3058296 CATGCCAAAAGAAAAACCGTTACCGCTATGGATGTTGTCTATGCTCTTAAAAGACAAGGA 3058237 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | |||| || || ||| |||||| Sbjct 3058236 AGAACACTTTACGGATTCGGAGGTTAAT 3058209 Score = 145 bits (160), Expect = 1e-30 Identities = 195/269 (72%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | |||||| |||||||| ||||||||||| || ||||||||| Sbjct 3557848 GCAAAACGCCATCGTAAAGTTCTTCGTGATAACATTCAAGGAATCACTAAACCAGCTATC 3557907 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| | || || || || ||| |||||||| | |||||||||| | Sbjct 3557908 CGTCGTCTTGCTCGCAGAGGAGGTGTTAAACGTATCTCTGGACTTATCTATGAAGAAACC 3557967 Query 16553 CGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| |||| | || ||| ||| | | | |||||| | |||||| || ||| || Sbjct 3557968 CGTACTGTTCTTAA-ATCATTCTTGGAAAACGTTATTCGTGATGCCGTCACATATTGTGA 3558026 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||| | || || || ||| | |||||| | |||||||| | ||| | ||||| Sbjct 3558027 ACATGCCAAAAGAAAAACCGTTACCGCTATGGATGTTGTCTATGCTCTCAAAAGACAAGG 3558086 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | |||| || || ||| |||||| Sbjct 3558087 AAGAACACTTTACGGATTCGGAGGTTAAT 3558115 Score = 116 bits (128), Expect = 6e-22 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | |||||| ||||| || ||||||||||| |||||||| || Sbjct 1648305 GCAAAACGCCATCGAAAAGTTCTTCGTGATAATATTCAAGGAATCACGAAGCCAGCAATT 1648246 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || ||| | ||||| || || ||| | |||||| | | |||||||| | Sbjct 1648245 CGCCGTCTTGCACGTAGAGGTGGTGTTAAACGTATTTCTGGACTTATTTATGAAGAAACA 1648186 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 ||| |||| | ||| ||| | ||| ||||| | ||||||| | ||| || Sbjct 1648185 CGTACTGTTCTCAAGTCTTTCTTGGAGAATGTTATTCGTGATGCTGTAACATATTGTGAA 1648126 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||||| | || ||||| || | |||||| | || ||||| | ||| | ||||| Sbjct 1648125 CATGCTAAGAGAAAAACTGTTACTGCTATGGATGTTGTTTATGCTCTTAAAAGACAAGG 1648067 >seq2 Length=16759152 Score = 154 bits (170), Expect = 2e-33 Identities = 201/273 (74%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | |||||| |||||||| |||||||| || || ||||| ||| Sbjct 428198 GCAAAACGTCATCGTAAGGTTCTTCGTGATAACATTCAAGGAATTACAAAACCAGCAATC 428257 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||| | ||||| || || ||| | |||||| | | |||||||| | | Sbjct 428258 CGTCGTCTTGCACGTAGAGGTGGTGTAAAACGTATTTCTGGACTTATTTATGAAGAAACT 428317 Query 16553 CGTGATGTTTTGAAGATCTTCCTCA-AGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 ||| |||| | || ||||| || | | | || || | ||||||| || || ||| | Sbjct 428318 CGTACTGTTCTTAA-ATCTTTCTTAGAAAATGTCATTCGTGATGCTGTTACA-TATTGTG 428375 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| |||||| | || ||||| || | |||||| | || |||||| | ||| | |||| Sbjct 428376 AGCATGCTAAAAGAAAAACTGTTACTGCTATGGATGTTGTTTATGCACTTAAAAGACAAG 428435 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 | | | ||||||| |||||| |||||| || Sbjct 428436 GAAGAACACTTTATGGATTTGGAGGTTAATTTT 428468 Score = 150 bits (166), Expect = 3e-32 Identities = 202/275 (73%), Gaps = 7/275 (3%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | |||||| ||||| || ||||||||||| || |||||||| Sbjct 3730213 GCAAAACGCCATCGTAAAGTTCTTCGTGATAATATTCAAGGAATCACAAAACCAGCTATT 3730272 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||| | ||||| || |||||| |||||||| | | |||||||| | Sbjct 3730273 CGTCGTCTTGCACGTAGAGGTGGTGTAAAGCGTATCTCTGGACTTATTTATGAAGAAACA 3730332 Query 16553 CGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--C 16609 ||| |||| | || ||| ||| | ||| |||||| | ||||||| | | |||| Sbjct 3730333 CGTACTGTTCTTAA-ATCTTTCTTGGAGAACGTTATTCGTGATGCTGT--AACATACTGT 3730389 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 || || |||||| | || ||||| || |||||||| | || ||||| | ||| | ||| Sbjct 3730390 GAACATGCTAAAAGAAAAACTGTTACAGCCATGGATGTTGTTTATGCTCTCAAAAGACAA 3730449 Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAA-TCTT 16703 || | | ||||||| |||||| | ||| |||| Sbjct 3730450 GGAAGAACACTTTATGGATTTGGAGGATAACTCTT 3730484 Score = 136 bits (150), Expect = 6e-28 Identities = 191/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | ||||| |||||||||||||||||||| || |||||||| Sbjct 4350765 GCAAAACGCCATCGTAAAGTCCTTCGTGATAACATCCAAGGAATCACAAAACCAGCTATT 4350824 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| | || || || || ||| | |||||| | |||||||||| | | Sbjct 4350825 CGTCGTCTTGCTCGCAGAGGAGGTGTAAAACGTATTTCTGGACTCATCTATGAAGAAACT 4350884 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 ||| ||| | ||| ||| | | | || || | ||||||| || ||| |||| Sbjct 4350885 CGTACAGTTCTTAAGTCATTCTTGGAAAATGTCATTCGTGATGCTGTCACCTACTGCGAG 4350944 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | || |||||||| | |||||| | || ||||| | ||| | ||||| Sbjct 4350945 CATGCCAAGAGAAAAACTGTCACTGCTATGGATGTTGTTTATGCTCTTAAAAGACAAGGT 4351004 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | |||||||||| || | |||| Sbjct 4351005 AGAACCCTTTATGGTTTCGGTGGATAAT 4351032 >seq3 Length=4663306 Score = 134 bits (148), Expect = 2e-27 Identities = 192/268 (72%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| || ||| | | | |||||| ||||| || |||||||||||||| |||||||| Sbjct 885586 GCTAAACGCCATAGAAAAGTTCTTCGTGATAATATTCAAGGAATCACCAAACCAGCTATT 885645 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || ||| | ||||| || || ||| | |||||| | | |||||||| | | Sbjct 885646 CGCCGTCTTGCCCGTAGAGGTGGTGTAAAACGTATTTCTGGACTTATTTATGAAGAAACT 885705 Query 16553 CGTGATGTTTTGAAGATCTTCCTCA-AGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| ||| | || ||||| || | | | ||||| | |||||| | ||| || Sbjct 885706 CGTACAGTTCTTAA-ATCTTTCTTAGAAAATGTTATTCGAGATGCTGTTACTTATTGTGA 885764 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || |||||| | || ||||| || | |||||| | || |||||| | ||| | ||||| Sbjct 885765 ACATGCTAAAAGAAAAACTGTTACAGCTATGGATGTTGTTTATGCACTTAAAAGACAAGG 885824 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | ||||||| |||||| | ||| Sbjct 885825 AAGAACTCTTTATGGATTTGGAGGATAA 885852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075076568555