Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1 159 5e-35
seq2 154 2e-33
seq3 134 2e-27
>seq1
Length=11693564
Score = 159 bits (176), Expect = 5e-35
Identities = 196/268 (73%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || || ||||| | | |||||| |||||||| ||||||||||||||||||||||||
Sbjct 3058476 GCAAAACGCCATCGTAAAGTTCTTCGTGATAACATTCAAGGAATCACCAAGCCAGCTATC 3058417
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| ||||| | || || || || ||| |||||||| | |||||||||| |
Sbjct 3058416 CGTCGTCTTGCTCGCAGAGGAGGTGTTAAACGTATCTCTGGACTTATCTATGAAGAAACC 3058357
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
||| |||| | || |||| | | | |||||| | ||||||| || ||| ||
Sbjct 3058356 CGTACTGTTCTTAAATCCTTCTTGGAAAACGTTATTCGTGATGCTGTCACATATTGTGAA 3058297
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || ||| | || || || ||| | |||||| | |||||||| | ||| | |||||
Sbjct 3058296 CATGCCAAAAGAAAAACCGTTACCGCTATGGATGTTGTCTATGCTCTTAAAAGACAAGGA 3058237
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700
| | |||| || || ||| ||||||
Sbjct 3058236 AGAACACTTTACGGATTCGGAGGTTAAT 3058209
Score = 145 bits (160), Expect = 1e-30
Identities = 195/269 (72%), Gaps = 2/269 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || || ||||| | | |||||| |||||||| ||||||||||| || |||||||||
Sbjct 3557848 GCAAAACGCCATCGTAAAGTTCTTCGTGATAACATTCAAGGAATCACTAAACCAGCTATC 3557907
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| ||||| | || || || || ||| |||||||| | |||||||||| |
Sbjct 3557908 CGTCGTCTTGCTCGCAGAGGAGGTGTTAAACGTATCTCTGGACTTATCTATGAAGAAACC 3557967
Query 16553 CGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| |||| | || ||| ||| | | | |||||| | |||||| || ||| ||
Sbjct 3557968 CGTACTGTTCTTAA-ATCATTCTTGGAAAACGTTATTCGTGATGCCGTCACATATTGTGA 3558026
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| || ||| | || || || ||| | |||||| | |||||||| | ||| | |||||
Sbjct 3558027 ACATGCCAAAAGAAAAACCGTTACCGCTATGGATGTTGTCTATGCTCTCAAAAGACAAGG 3558086
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700
| | |||| || || ||| ||||||
Sbjct 3558087 AAGAACACTTTACGGATTCGGAGGTTAAT 3558115
Score = 116 bits (128), Expect = 6e-22
Identities = 169/239 (71%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || || ||||| | | |||||| ||||| || ||||||||||| |||||||| ||
Sbjct 1648305 GCAAAACGCCATCGAAAAGTTCTTCGTGATAATATTCAAGGAATCACGAAGCCAGCAATT 1648246
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||| || ||| | ||||| || || ||| | |||||| | | |||||||| |
Sbjct 1648245 CGCCGTCTTGCACGTAGAGGTGGTGTTAAACGTATTTCTGGACTTATTTATGAAGAAACA 1648186
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
||| |||| | ||| ||| | ||| ||||| | ||||||| | ||| ||
Sbjct 1648185 CGTACTGTTCTCAAGTCTTTCTTGGAGAATGTTATTCGTGATGCTGTAACATATTGTGAA 1648126
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| ||||| | || ||||| || | |||||| | || ||||| | ||| | |||||
Sbjct 1648125 CATGCTAAGAGAAAAACTGTTACTGCTATGGATGTTGTTTATGCTCTTAAAAGACAAGG 1648067
>seq2
Length=16759152
Score = 154 bits (170), Expect = 2e-33
Identities = 201/273 (74%), Gaps = 4/273 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || |||||||| | |||||| |||||||| |||||||| || || ||||| |||
Sbjct 428198 GCAAAACGTCATCGTAAGGTTCTTCGTGATAACATTCAAGGAATTACAAAACCAGCAATC 428257
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| || ||| | ||||| || || ||| | |||||| | | |||||||| | |
Sbjct 428258 CGTCGTCTTGCACGTAGAGGTGGTGTAAAACGTATTTCTGGACTTATTTATGAAGAAACT 428317
Query 16553 CGTGATGTTTTGAAGATCTTCCTCA-AGACCGTTATCCATGATGCT-TTCCACTATACCG 16610
||| |||| | || ||||| || | | | || || | ||||||| || || ||| |
Sbjct 428318 CGTACTGTTCTTAA-ATCTTTCTTAGAAAATGTCATTCGTGATGCTGTTACA-TATTGTG 428375
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
|||| |||||| | || ||||| || | |||||| | || |||||| | ||| | ||||
Sbjct 428376 AGCATGCTAAAAGAAAAACTGTTACTGCTATGGATGTTGTTTATGCACTTAAAAGACAAG 428435
Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703
| | | ||||||| |||||| |||||| ||
Sbjct 428436 GAAGAACACTTTATGGATTTGGAGGTTAATTTT 428468
Score = 150 bits (166), Expect = 3e-32
Identities = 202/275 (73%), Gaps = 7/275 (3%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || || ||||| | | |||||| ||||| || ||||||||||| || ||||||||
Sbjct 3730213 GCAAAACGCCATCGTAAAGTTCTTCGTGATAATATTCAAGGAATCACAAAACCAGCTATT 3730272
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| || ||| | ||||| || |||||| |||||||| | | |||||||| |
Sbjct 3730273 CGTCGTCTTGCACGTAGAGGTGGTGTAAAGCGTATCTCTGGACTTATTTATGAAGAAACA 3730332
Query 16553 CGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--C 16609
||| |||| | || ||| ||| | ||| |||||| | ||||||| | | ||||
Sbjct 3730333 CGTACTGTTCTTAA-ATCTTTCTTGGAGAACGTTATTCGTGATGCTGT--AACATACTGT 3730389
Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669
|| || |||||| | || ||||| || |||||||| | || ||||| | ||| | |||
Sbjct 3730390 GAACATGCTAAAAGAAAAACTGTTACAGCCATGGATGTTGTTTATGCTCTCAAAAGACAA 3730449
Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAA-TCTT 16703
|| | | ||||||| |||||| | ||| ||||
Sbjct 3730450 GGAAGAACACTTTATGGATTTGGAGGATAACTCTT 3730484
Score = 136 bits (150), Expect = 6e-28
Identities = 191/268 (71%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || || ||||| | | ||||| |||||||||||||||||||| || ||||||||
Sbjct 4350765 GCAAAACGCCATCGTAAAGTCCTTCGTGATAACATCCAAGGAATCACAAAACCAGCTATT 4350824
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| ||||| | || || || || ||| | |||||| | |||||||||| | |
Sbjct 4350825 CGTCGTCTTGCTCGCAGAGGAGGTGTAAAACGTATTTCTGGACTCATCTATGAAGAAACT 4350884
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
||| ||| | ||| ||| | | | || || | ||||||| || ||| ||||
Sbjct 4350885 CGTACAGTTCTTAAGTCATTCTTGGAAAATGTCATTCGTGATGCTGTCACCTACTGCGAG 4350944
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || || | || |||||||| | |||||| | || ||||| | ||| | |||||
Sbjct 4350945 CATGCCAAGAGAAAAACTGTCACTGCTATGGATGTTGTTTATGCTCTTAAAAGACAAGGT 4351004
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700
| | |||||||||| || | ||||
Sbjct 4351005 AGAACCCTTTATGGTTTCGGTGGATAAT 4351032
>seq3
Length=4663306
Score = 134 bits (148), Expect = 2e-27
Identities = 192/268 (72%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||| || ||| | | | |||||| ||||| || |||||||||||||| ||||||||
Sbjct 885586 GCTAAACGCCATAGAAAAGTTCTTCGTGATAATATTCAAGGAATCACCAAACCAGCTATT 885645
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||| || ||| | ||||| || || ||| | |||||| | | |||||||| | |
Sbjct 885646 CGCCGTCTTGCCCGTAGAGGTGGTGTAAAACGTATTTCTGGACTTATTTATGAAGAAACT 885705
Query 16553 CGTGATGTTTTGAAGATCTTCCTCA-AGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| ||| | || ||||| || | | | ||||| | |||||| | ||| ||
Sbjct 885706 CGTACAGTTCTTAA-ATCTTTCTTAGAAAATGTTATTCGAGATGCTGTTACTTATTGTGA 885764
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| |||||| | || ||||| || | |||||| | || |||||| | ||| | |||||
Sbjct 885765 ACATGCTAAAAGAAAAACTGTTACAGCTATGGATGTTGTTTATGCACTTAAAAGACAAGG 885824
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | ||||||| |||||| | |||
Sbjct 885825 AAGAACTCTTTATGGATTTGGAGGATAA 885852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075076568555
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |