Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq2 257 3e-63 >seq2 Length=16759152 Score = 257 bits (284), Expect = 3e-63 Identities = 659/1002 (66%), Gaps = 35/1002 (3%) Strand=Plus/Minus Query 193431 AAAAAAGCATTAATAACAGGCATAACTGGGCAGGATGGATCTTATCTTGCCGAGTTTCTT 193490 |||| ||| | || || || |||||||| || ||||| |||||| | || || | ||| Sbjct 11788190 AAAATAGCTCTTATTACCGGTATAACTGGTCAAGATGGTTCTTATTTGGCTGAACTACTT 11788131 Query 193491 TTGTCTAAGGGATATGAAGTTCATGGTATTGTAAGGAGAAGTTCCCTAATCAATACTCAT 193550 | | || |||||| || ||||||||| || | ||| ||| | | ||||||||| Sbjct 11788130 ATAGCCAAAGGATATTCTGTACATGGTATTATACGCAGATCTTCTACATTTAATACTCAT 11788071 Query 193551 AGAATTGATCATATCTATG-----------------AGAAGATCACT----------CTT 193583 | |||| ||| | |||| | | ||||| ||| Sbjct 11788070 CGGATTGCACATTTATATGCTGATCCAAATATACATAAAGGATCATCAACATTTCAACTT 11788011 Query 193584 CATTATGGAGATCTAACTGATCCTGTAAATGTTATGGGTGTCATTAGGGCAGTTGAACCT 193643 |||||||| ||| | |||||| | | | |||| | || | || |||| Sbjct 11788010 CATTATGGTGATATGACTGATTCATCATGTCTTATTAAATTGATATCAAAAATTCAACCA 11787951 Query 193644 GCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAG 193703 |||| || ||| |||||| ||| |||||||||||||||||| ||||| | || || Sbjct 11787950 ACTGAAATTTATCATCTTGCTGCACAAAGTCATGTTAAAGTTAGTTTTGATTTACCTGAA 11787891 Query 193704 TATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTG 193763 ||||| | | || ||||| |||| || | ||| | || || || || ||| || Sbjct 11787890 TATACAGCAGAAGTAGATGCAGTAGGTACATTAAGACTTCTAGATGCTATT-GTAGCATG 11787832 Query 193764 GGAA-TGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGT 193822 | | | | | ||| | |||||||| |||||| ||||| ||||| || Sbjct 11787831 TAATCTTCAACATAAGGTTAAATTTTATCAGGCTTCTACCTCAGAACTTTATGGAAAAGT 11787772 Query 193823 TCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGC 193882 || || | ||||| | |||||| ||||||||| |||| | |||||||| ||||| Sbjct 11787771 TCAAGAAATTCCACAAAAAGAAACAACACCATTTTATCCTAGAAGTCCTTATGCAGTAGC 11787712 Query 193883 AAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAG 193942 ||| || |||| | |||||| || || ||||||||||| |||||||| | ||| | Sbjct 11787711 AAAATTATATGCATTTTGGATAATTAAAAATTATCGTGAAGCATATGGAATTTTTGCTTG 11787652 Query 193943 TTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAA 194002 | ||| || | || ||||| ||||| |||||||||||| | | |||||||| | || Sbjct 11787651 TAATGGAATATTATTTAATCATGAATCACCAAGAAGAGGTAATAATTTTGTAACAAGAAA 11787592 Query 194003 GATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTA--TCTTGGT 194060 |||||| || | || |||| || | | || | | |||| | ||| ||||||| Sbjct 11787591 AATTACAAGAGCTGTAGCTAAAATTAATATAGGTGTTC--AAGAAACATTATCTCTTGGT 11787534 Query 194061 AATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTA 194120 ||| | ||||||| | |||||||| || ||||| || ||||| || || |||||| | Sbjct 11787533 AATTTGGATGCTAAACGTGATTGGGGCCATGCAAAAGAGTATGTAGAGGCAATGTGGAGA 11787474 Query 194121 ATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTT 194180 || | ||||| |||| | | ||||||| ||| || ||||||| || | ||| Sbjct 11787473 ATCCTCCAACATGATGTAGCAGATGATTTTGTTATATCTACAGGAAAAACTGAAAGTGTA 11787414 Query 194181 AGAGACTTTGTGAATGAAGCAGCACCCTATTTTGGTTTTAAACTAGAATGGATGGGTGAA 194240 ||||| ||| ||| ||| | | ||||| | ||| || |||| |||||| Sbjct 11787413 AGAGAATTTTGTAATTTAGCTTTTGCTGAAATTGGTATGAAATTAATATGGCAAGGTGAA 11787354 Query 194241 GGTGAAGACGAGATTGCTCTCGATTGGAATAC-TaaaaaaaCAATCATCGGAATCAACCC 194299 || | | | || ||| | | || || || |||| | | || | | | || Sbjct 11787353 GGAGTAAATGAAGTTGGTATTGAAGAAAAAACAGGAAAAGTCCGTGTTC-GTGTTGATCC 11787295 Query 194300 TAGATACTTCAGACCTGCAGAAGTGGATTCATTATTAGGTGATGCTACAAAAGCAAAAGA 194359 | |||| | || ||||||| ||| ||| | || ||| |||||||||| ||||| Sbjct 11787294 AAATTACTATCGTCCAACAGAAGTTGATCTTTTAATTGGAGATCCTACAAAAGCTAAAGA 11787235 Query 194360 AGTTTTAGGTTGGGAACCTAAGATTAAATTTAAAGAATTGGT 194401 || || || |||||| | || |||| ||| ||||||||||| Sbjct 11787234 GGTATTGGGATGGGAAGCCAAAATTACATTAAAAGAATTGGT 11787193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807553837250600