Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq2 257 3e-63
>seq2
Length=16759152
Score = 257 bits (284), Expect = 3e-63
Identities = 659/1002 (66%), Gaps = 35/1002 (3%)
Strand=Plus/Minus
Query 193431 AAAAAAGCATTAATAACAGGCATAACTGGGCAGGATGGATCTTATCTTGCCGAGTTTCTT 193490
|||| ||| | || || || |||||||| || ||||| |||||| | || || | |||
Sbjct 11788190 AAAATAGCTCTTATTACCGGTATAACTGGTCAAGATGGTTCTTATTTGGCTGAACTACTT 11788131
Query 193491 TTGTCTAAGGGATATGAAGTTCATGGTATTGTAAGGAGAAGTTCCCTAATCAATACTCAT 193550
| | || |||||| || ||||||||| || | ||| ||| | | |||||||||
Sbjct 11788130 ATAGCCAAAGGATATTCTGTACATGGTATTATACGCAGATCTTCTACATTTAATACTCAT 11788071
Query 193551 AGAATTGATCATATCTATG-----------------AGAAGATCACT----------CTT 193583
| |||| ||| | |||| | | ||||| |||
Sbjct 11788070 CGGATTGCACATTTATATGCTGATCCAAATATACATAAAGGATCATCAACATTTCAACTT 11788011
Query 193584 CATTATGGAGATCTAACTGATCCTGTAAATGTTATGGGTGTCATTAGGGCAGTTGAACCT 193643
|||||||| ||| | |||||| | | | |||| | || | || ||||
Sbjct 11788010 CATTATGGTGATATGACTGATTCATCATGTCTTATTAAATTGATATCAAAAATTCAACCA 11787951
Query 193644 GCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAG 193703
|||| || ||| |||||| ||| |||||||||||||||||| ||||| | || ||
Sbjct 11787950 ACTGAAATTTATCATCTTGCTGCACAAAGTCATGTTAAAGTTAGTTTTGATTTACCTGAA 11787891
Query 193704 TATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTG 193763
||||| | | || ||||| |||| || | ||| | || || || || ||| ||
Sbjct 11787890 TATACAGCAGAAGTAGATGCAGTAGGTACATTAAGACTTCTAGATGCTATT-GTAGCATG 11787832
Query 193764 GGAA-TGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGT 193822
| | | | | ||| | |||||||| |||||| ||||| ||||| ||
Sbjct 11787831 TAATCTTCAACATAAGGTTAAATTTTATCAGGCTTCTACCTCAGAACTTTATGGAAAAGT 11787772
Query 193823 TCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGC 193882
|| || | ||||| | |||||| ||||||||| |||| | |||||||| |||||
Sbjct 11787771 TCAAGAAATTCCACAAAAAGAAACAACACCATTTTATCCTAGAAGTCCTTATGCAGTAGC 11787712
Query 193883 AAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAG 193942
||| || |||| | |||||| || || ||||||||||| |||||||| | ||| |
Sbjct 11787711 AAAATTATATGCATTTTGGATAATTAAAAATTATCGTGAAGCATATGGAATTTTTGCTTG 11787652
Query 193943 TTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAA 194002
| ||| || | || ||||| ||||| |||||||||||| | | |||||||| | ||
Sbjct 11787651 TAATGGAATATTATTTAATCATGAATCACCAAGAAGAGGTAATAATTTTGTAACAAGAAA 11787592
Query 194003 GATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTA--TCTTGGT 194060
|||||| || | || |||| || | | || | | |||| | ||| |||||||
Sbjct 11787591 AATTACAAGAGCTGTAGCTAAAATTAATATAGGTGTTC--AAGAAACATTATCTCTTGGT 11787534
Query 194061 AATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTA 194120
||| | ||||||| | |||||||| || ||||| || ||||| || || |||||| |
Sbjct 11787533 AATTTGGATGCTAAACGTGATTGGGGCCATGCAAAAGAGTATGTAGAGGCAATGTGGAGA 11787474
Query 194121 ATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTT 194180
|| | ||||| |||| | | ||||||| ||| || ||||||| || | |||
Sbjct 11787473 ATCCTCCAACATGATGTAGCAGATGATTTTGTTATATCTACAGGAAAAACTGAAAGTGTA 11787414
Query 194181 AGAGACTTTGTGAATGAAGCAGCACCCTATTTTGGTTTTAAACTAGAATGGATGGGTGAA 194240
||||| ||| ||| ||| | | ||||| | ||| || |||| ||||||
Sbjct 11787413 AGAGAATTTTGTAATTTAGCTTTTGCTGAAATTGGTATGAAATTAATATGGCAAGGTGAA 11787354
Query 194241 GGTGAAGACGAGATTGCTCTCGATTGGAATAC-TaaaaaaaCAATCATCGGAATCAACCC 194299
|| | | | || ||| | | || || || |||| | | || | | | ||
Sbjct 11787353 GGAGTAAATGAAGTTGGTATTGAAGAAAAAACAGGAAAAGTCCGTGTTC-GTGTTGATCC 11787295
Query 194300 TAGATACTTCAGACCTGCAGAAGTGGATTCATTATTAGGTGATGCTACAAAAGCAAAAGA 194359
| |||| | || ||||||| ||| ||| | || ||| |||||||||| |||||
Sbjct 11787294 AAATTACTATCGTCCAACAGAAGTTGATCTTTTAATTGGAGATCCTACAAAAGCTAAAGA 11787235
Query 194360 AGTTTTAGGTTGGGAACCTAAGATTAAATTTAAAGAATTGGT 194401
|| || || |||||| | || |||| ||| |||||||||||
Sbjct 11787234 GGTATTGGGATGGGAAGCCAAAATTACATTAAAAGAATTGGT 11787193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 807553837250600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |