Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2 197 1e-45 >seq2 Length=16759152 Score = 197 bits (218), Expect = 1e-45 Identities = 562/854 (66%), Gaps = 28/854 (3%) Strand=Plus/Minus Query 21128 TAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTT 21187 || ||||| ||||| |||| |||||| ||||| | | | ||||||| || | ||| Sbjct 14764796 TAGAAATCGGCATCCAATGTAAAAACACGTTCTTCATCTGTAGACATAACACCGAATTTC 14764737 Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247 ||||| ||| |||| |||| || || |||||||| ||||| || | ||| ||| || Sbjct 14764736 TGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAATATTAACC 14764677 Query 21248 ATAAAATCAAATGGATT-TTCAGATT-TAAATATTTTATTACAACCCAGTTCTGATAATA 21305 ||||||||||| || || || | ||| |||| ||| | |||| ||||| || | Sbjct 14764676 ATAAAATCAAAGGGGTTCTTAACATTATAAAGTTTTGA--ACAATTAAGTTCCACCAACA 14764619 Query 21306 ATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 | || |||||| |||| |||||| ||||||||| | ||||| || |||| | Sbjct 14764618 AATGGTCAGCTACATATTCAATATATGTACACATTAAACGTGAGTTCATTCCAATCATAT 14764559 Query 21366 TTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGC---TTCAACAATTA 21422 ||||||||||| | ||| | | ||||| ||| || || || || |||| Sbjct 14764558 CAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCAACTGCATTTTTAATAATTT 14764499 Query 21423 TATTTAT-TATCCT--AGATGTACTAGGGGGATACAA--TAATTGTTTAAACATCAAACA 21477 ||||| | || ||||| | | | ||| ||| ||||||| | || Sbjct 14764498 CTTTTATACGTTCTTCAGATGGTTT----GTTTTCAAGGTAA----CTAAACATAAGGCA 14764447 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 || ||||||| || || || ||||| || || |||||||| ||| ||| || || Sbjct 14764446 GGCGAAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGAATGTGTCAATCC 14764387 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597 ||||| || || | || || | ||||||||| || ||||||| || |||||||| || Sbjct 14764386 TGGCATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAAGAAGAT 14764327 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAG-ATTCTTTATCCAATA 21656 || ||||| || ||||| |||| | |||||| || | |||| |||| ||||| | Sbjct 14764326 ACCTTCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATTC-TTATCAGCGA 14764268 Query 21657 TCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTA 21716 ||||| || ||||| | || |||| | | ||| | || ||| | ||| || | Sbjct 14764267 TCCATCTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTAAAGCATTAA 14764208 Query 21717 AAAG-ATGAtttttt--tCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACA 21773 |||| | ||| ||| |||| || || ||| | ||||| Sbjct 14764207 AAAGTTTCATTCTTTCGTCATTGTCA-CGTATATAGGTTTCGATAAGTTTTGA--ATACA 14764151 Query 21774 TTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAAC 21833 | ||| || |||||||| || || || || || || || || | | |||||| | | Sbjct 14764150 TCTCACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCTCGGGAA 14764091 Query 21834 ATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893 |||||| || | |||||| | |||| || ||||| || || |||||| |||| Sbjct 14764090 TTTGAACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAGAAGCGG 14764031 Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAAT 21953 |||| || || || | | | |||||| | || || || ||||| | | || ||| | Sbjct 14764030 CAAAGAAAGCTAAGACACGTGAAATAAAAAAACGCTCATTGTCTGTCATTGATTCCCAGT 14763971 Query 21954 CTAATAAATCTTTT 21967 || | ||||||| Sbjct 14763970 CTCTCATATCTTTT 14763957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531899902417400