Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq2 197 1e-45
>seq2
Length=16759152
Score = 197 bits (218), Expect = 1e-45
Identities = 562/854 (66%), Gaps = 28/854 (3%)
Strand=Plus/Minus
Query 21128 TAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTT 21187
|| ||||| ||||| |||| |||||| ||||| | | | ||||||| || | |||
Sbjct 14764796 TAGAAATCGGCATCCAATGTAAAAACACGTTCTTCATCTGTAGACATAACACCGAATTTC 14764737
Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247
||||| ||| |||| |||| || || |||||||| ||||| || | ||| ||| ||
Sbjct 14764736 TGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAATATTAACC 14764677
Query 21248 ATAAAATCAAATGGATT-TTCAGATT-TAAATATTTTATTACAACCCAGTTCTGATAATA 21305
||||||||||| || || || | ||| |||| ||| | |||| ||||| || |
Sbjct 14764676 ATAAAATCAAAGGGGTTCTTAACATTATAAAGTTTTGA--ACAATTAAGTTCCACCAACA 14764619
Query 21306 ATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365
| || |||||| |||| |||||| ||||||||| | ||||| || |||| |
Sbjct 14764618 AATGGTCAGCTACATATTCAATATATGTACACATTAAACGTGAGTTCATTCCAATCATAT 14764559
Query 21366 TTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGC---TTCAACAATTA 21422
||||||||||| | ||| | | ||||| ||| || || || || ||||
Sbjct 14764558 CAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCAACTGCATTTTTAATAATTT 14764499
Query 21423 TATTTAT-TATCCT--AGATGTACTAGGGGGATACAA--TAATTGTTTAAACATCAAACA 21477
||||| | || ||||| | | | ||| ||| ||||||| | ||
Sbjct 14764498 CTTTTATACGTTCTTCAGATGGTTT----GTTTTCAAGGTAA----CTAAACATAAGGCA 14764447
Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537
|| ||||||| || || || ||||| || || |||||||| ||| ||| || ||
Sbjct 14764446 GGCGAAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGAATGTGTCAATCC 14764387
Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597
||||| || || | || || | ||||||||| || ||||||| || |||||||| ||
Sbjct 14764386 TGGCATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAAGAAGAT 14764327
Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAG-ATTCTTTATCCAATA 21656
|| ||||| || ||||| |||| | |||||| || | |||| |||| ||||| |
Sbjct 14764326 ACCTTCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATTC-TTATCAGCGA 14764268
Query 21657 TCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTA 21716
||||| || ||||| | || |||| | | ||| | || ||| | ||| || |
Sbjct 14764267 TCCATCTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTAAAGCATTAA 14764208
Query 21717 AAAG-ATGAtttttt--tCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACA 21773
|||| | ||| ||| |||| || || ||| | |||||
Sbjct 14764207 AAAGTTTCATTCTTTCGTCATTGTCA-CGTATATAGGTTTCGATAAGTTTTGA--ATACA 14764151
Query 21774 TTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAAC 21833
| ||| || |||||||| || || || || || || || || | | |||||| | |
Sbjct 14764150 TCTCACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCTCGGGAA 14764091
Query 21834 ATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893
|||||| || | |||||| | |||| || ||||| || || |||||| ||||
Sbjct 14764090 TTTGAACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAGAAGCGG 14764031
Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAAT 21953
|||| || || || | | | |||||| | || || || ||||| | | || ||| |
Sbjct 14764030 CAAAGAAAGCTAAGACACGTGAAATAAAAAAACGCTCATTGTCTGTCATTGATTCCCAGT 14763971
Query 21954 CTAATAAATCTTTT 21967
|| | |||||||
Sbjct 14763970 CTCTCATATCTTTT 14763957
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531899902417400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |