Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2 156 4e-33 >seq2 Length=16759152 Score = 156 bits (172), Expect = 4e-33 Identities = 706/1099 (64%), Gaps = 55/1099 (5%) Strand=Plus/Minus Query 147132 TTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTTAAACCCTTTTCCCAAGAA 147191 |||| || ||||| ||||| ||||| ||||| ||||||||||| || || ||| | Sbjct 8586480 TTTGAAGCTGGTTTAGTTCTTAAATAATACATTCCCGTTTTTAAGCCACGTTTCCATCCA 8586421 Query 147192 TAGTCGTGAATGGATG---ATAAAACTTTATAGGTTGGATTGGCCACAAAAAGATTGAGC 147248 || || || || ||| | | ||| ||||| || | | ||||| | || Sbjct 8586420 TAAAAATGCATTGAACTACATATACC---ATAAGTTGGTTTACTTAGATAAAGACTAAGT 8586364 Query 147249 GATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATGTCCAACACTA-CTTTTTG 147307 ||||| ||||| || |||| ||||| || || ||||| ||||| | | ||||||| Sbjct 8586363 GATTGAGATTGATCAATAAAAGGCCCCCGATCAGCAGCCAT-TCCAATAATGTCTTTTTG 8586305 Query 147308 TTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTGTGGAATTTCATCAATATT 147367 | ||||||||| | || || | || | | ||| | | |||||| ||| ||||| Sbjct 8586304 TGAAATTTCCCATACAGTTTTATAAAGTTCTTGGATGTCTTTTGGAATATCAGGTATATT 8586245 Query 147368 TTGTACAGATCCGTTGTTTTTAATAATTTTTATCA-TGATA--TCTGTCGAATATACGTT 147424 ||| | ||||| || |||| ||| ||||| | | | || || || || ||| Sbjct 8586244 TTGAATGGATCCATTATTTTCAATTATTTTATTGAGTAATCCTTCATTCCAA-ATAT--- 8586189 Query 147425 GGTGTCTACGAG---TTTATCGACG----AGATGCTGATTGACCACTTGATACTCGCCCG 147477 || ||| || | ||| ||||| ||| || |||||| | || || | Sbjct 8586188 ------TAAGAGAAATTAAATCACGTAGAAGATGAGTATTTACAACTTGAAAATCTCCAG 8586135 Query 147478 ACAGAACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAACGACTCGTTGTTACCTA 147537 | | ||||| | | || | |||| |||| | || || | || || ||||| || | Sbjct 8586134 ATAAAACTCGCCTTGTATATATATTAGAAGTATATGGTTCAATAGATTCATTGTTTCCAA 8586075 Query 147538 GAATCTGTGCAGTCGTTGCCGTCGGCATGTAAGCAATCAATAATGAATTGCGTAAGCCGT 147597 |||| || | || | ||| || ||||| |||||| |||||||||||||| | || Sbjct 8586074 GAATTTGAGATGTAGATGCTGTAGGCATTGGAGCAATTAATAATGAATTGCGAAGACCAA 8586015 Query 147598 ---GCATAGCCATTTCTCGCTTAAGCTCGTCCCAGTTCCAAAGATCATTCGATTGGTTAA 147654 | ||| |||||| |||| | ||||| | ||| | |||| | | | ||| Sbjct 8586014 AACGTATA---ATTTCTTGCTTTAAAATATCCCATTCCCATAAATCACTTG---GAATAA 8585961 Query 147655 TATTCCACAAATCAAACTGTAAAAGTCCACAACTTGCAGGGCTTCCATCGTAAGAATCGT 147714 |||||||| |||| |||| | || ||| ||| || | | | | | || | Sbjct 8585960 CATTCCACATATCATACTGAAGAATTCCTTTGGATGCTGGAGAATCTTTGAATGTTTCAT 8585901 Query 147715 ATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGACTT--AGTGCACCATAATAAATAGT 147772 | ||| | | || | | ||| | | | ||| |||||||||| ||||||||| Sbjct 8585900 AACATCCATACTTCTTTGACAATTC-ACAGGAAG-CTTCAAGTGCACCATGATAAATAGT 8585843 Query 147773 TTCTGAAATCTTTTTATTTAAATCTCTAGCCTCTTG-GCTGTCGTAGGGCATATC-CAAA 147830 ||| |||| ||| |||| | |||| |||| ||| | | ||| ||| ||| | || | Sbjct 8585842 TTCAAAAATTTTTATATTAAGATCTTTAGCTTCTGGTGATGTGAAAGG--ATACCTCATA 8585785 Query 147831 ATGGCGAACGTATCCGCAAGTCCTTGAATACCGATACCGATGGGTCGGTGTCTGAAATTC 147890 | || ||||| ||||||||||||| ||| || || || || || || | | ||| Sbjct 8585784 AGCAAAAATGTATCAGCAAGTCCTTGAACACCAATTCCAATTGGACGATGCTTAAGATTT 8585725 Query 147891 GATGCTTGAGCGCTAGCCAACGGATAAAAATTCAAGTCGATAATTTTATTGAGATTATTG 147950 ||| |||| | | ||||||||||| | || ||||||||||| | ||| | Sbjct 8585724 GATAAACGAGCTTCTTCTAGTGGATAAAAATTAATATCAATAATTTTATTTAAATTTCTT 8585665 Query 147951 GTAACCACTCTAGATACATTGTAGAGCGACTTAAAGTCGAA-----GCTTTTAAACTGTT 148005 || || | | | | |||| | ||| |||||||| || | |||| || || Sbjct 8585664 GTTACAATTTTTGTCACATCATGAAGCATTTTAAAGTCAAATGTAGGTTTTTTTTCTTTT 8585605 Query 148006 -TATTGGCAAAATTATTTACGGCAATCGAGGCCAAGTTACACACGGCCGTTTCTCGATTG 148064 || |||| |||| | ||||| || || || ||||| || || | ||| ||| Sbjct 8585604 ATAACAACAAACATATTAAGTGCAATTGATGCTAAATTACAAACAGCAACT--TCGCTTG 8585547 Query 148065 TCG--CTATATTGAACGATTTCGGCACACAGATTGCTGTTTCGAATCACTCCCTCGtttt 148122 | | |||||||| ||||| | ||| ||||| || |||| ||| |||| Sbjct 8585546 GAGAACAATATTGAATAATTTCAGTACATAGATTTGAACATCTAATCGTTCCTAAATTTT 8585487 Query 148123 tttGATTATTTTTATTGTTAACGTGATCTTTAAACATCATGTATGGAGCTCCGGTCTCGA 148182 ||||||| ||||| ||| ||||||||| | | ||| |||||| || || || | Sbjct 8585486 GTTGATTACTTTTACGATTACAATGATCTTTATAAACCATATATGGAATACCAGTTTCAA 8585427 Query 148183 CTTGAGTCTCAATAATTTT 148201 |||| ||| |||||| Sbjct 8585426 TCTGAGATTCACAAATTTT 8585408 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || |||||||| | ||||| |||| ||||| || | Sbjct 10682514 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCC 10682573 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| ||||||| ||||||||||| || ||||| |||||| Sbjct 10682574 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10682633 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| | || |||||||| ||||||| |||| | |||||||| Sbjct 10682634 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10682693 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| ||||| ||| ||||| |||| || | ||| | ||||| Sbjct 10682694 ATCCAAAAGGAATCAACTCTCCATTTGGTTCTTCGTCTTCGTGGAGG 10682740 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || ||||| ||||| | || || | ||| ||||| || | Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| ||||||| ||||| ||||| || ||||| |||||| Sbjct 10683030 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 10683089 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | | ||| |||||||| ||||||| |||| | |||||||| Sbjct 10683090 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10683149 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| ||||| ||| | ||| |||| || | ||| | ||||| Sbjct 10683150 ATCCAAAAGGAATCAACTCTTCATTTGGTTCTTCGTCTTCGTGGAGG 10683196 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || ||||| ||||| | || || | ||| ||||| || | Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | |||||| ||| ||| || || ||||| || || || |||||| Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAA 10682177 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | | ||| |||||||| ||||||| |||| || ||||| || Sbjct 10682178 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682237 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||||||||||||| | ||| |||| || | ||| | ||||| Sbjct 10682238 ATCCAAAAAGAATCTACTCTTCATTTGGTTCTTCGTCTTCGTGGAGG 10682284 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || || || || ||| | ||||| | || |||| | | Sbjct 10681602 ATGCAAATTTTCGTTAAGACTTTGACAGGCAAAACTATCACTCTTGAGGTAGAGCCTTCC 10681661 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | ||||| ||||||| ||||||||||| || ||||| |||||| Sbjct 10681662 GACACTATTGACAATGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10681721 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | |||| | || |||||||| ||||||| |||| | |||||||| Sbjct 10681722 CAGAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10681781 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| ||||| ||| ||||| |||| || | ||| | ||||| Sbjct 10681782 ATCCAAAAGGAATCAACTCTCCATTTGGTTCTTCGTCTTCGTGGAGG 10681828 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || ||||| || ||| | || || | ||| | ||| || Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCT 10683257 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| ||||||| || || ||||| || ||||| |||||| Sbjct 10683258 GACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCAA 10683317 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| | ||| || ||||| || |||| |||| | || || ||| Sbjct 10683318 CAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAAC 10683377 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||| || ||| | ||| |||| || | ||| | ||||| Sbjct 10683378 ATTCAAAAAGAGTCAACTCTTCATTTGGTTCTCCGTCTTCGTGGAGG 10683424 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || ||||| || ||| | || || | ||| | ||| || Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10681889 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | |||||| ||| ||| || || ||||| || ||||| || ||| Sbjct 10681890 GACACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAA 10681949 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| | || |||||||| ||||||| || | | || || ||| Sbjct 10681950 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAAC 10682009 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||| || ||| | || | || || | ||| | ||||| Sbjct 10682010 ATTCAAAAAGAGTCAACTCTTCACTTAGTTCTTCGTCTTCGTGGAGG 10682056 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || ||||| || ||| | || || | ||| | ||| || Sbjct 10682286 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10682345 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || || ||||||| || || ||||| || ||||| |||||| Sbjct 10682346 GACACTATTGACAACGTTAAGTCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 10682405 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | | ||| |||||||| ||||||| |||| || ||||| || Sbjct 10682406 CAAAGATTAATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682465 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || ||| | || | || || | ||| | ||||| Sbjct 10682466 ATCCAAAAGGAGTCAACTCTTCACTTAGTTCTTCGTCTTCGTGGAGG 10682512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478661592257200