Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq2 156 4e-33
>seq2
Length=16759152
Score = 156 bits (172), Expect = 4e-33
Identities = 706/1099 (64%), Gaps = 55/1099 (5%)
Strand=Plus/Minus
Query 147132 TTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTTAAACCCTTTTCCCAAGAA 147191
|||| || ||||| ||||| ||||| ||||| ||||||||||| || || ||| |
Sbjct 8586480 TTTGAAGCTGGTTTAGTTCTTAAATAATACATTCCCGTTTTTAAGCCACGTTTCCATCCA 8586421
Query 147192 TAGTCGTGAATGGATG---ATAAAACTTTATAGGTTGGATTGGCCACAAAAAGATTGAGC 147248
|| || || || ||| | | ||| ||||| || | | ||||| | ||
Sbjct 8586420 TAAAAATGCATTGAACTACATATACC---ATAAGTTGGTTTACTTAGATAAAGACTAAGT 8586364
Query 147249 GATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATGTCCAACACTA-CTTTTTG 147307
||||| ||||| || |||| ||||| || || ||||| ||||| | | |||||||
Sbjct 8586363 GATTGAGATTGATCAATAAAAGGCCCCCGATCAGCAGCCAT-TCCAATAATGTCTTTTTG 8586305
Query 147308 TTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTGTGGAATTTCATCAATATT 147367
| ||||||||| | || || | || | | ||| | | |||||| ||| |||||
Sbjct 8586304 TGAAATTTCCCATACAGTTTTATAAAGTTCTTGGATGTCTTTTGGAATATCAGGTATATT 8586245
Query 147368 TTGTACAGATCCGTTGTTTTTAATAATTTTTATCA-TGATA--TCTGTCGAATATACGTT 147424
||| | ||||| || |||| ||| ||||| | | | || || || || |||
Sbjct 8586244 TTGAATGGATCCATTATTTTCAATTATTTTATTGAGTAATCCTTCATTCCAA-ATAT--- 8586189
Query 147425 GGTGTCTACGAG---TTTATCGACG----AGATGCTGATTGACCACTTGATACTCGCCCG 147477
|| ||| || | ||| ||||| ||| || |||||| | || || |
Sbjct 8586188 ------TAAGAGAAATTAAATCACGTAGAAGATGAGTATTTACAACTTGAAAATCTCCAG 8586135
Query 147478 ACAGAACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAACGACTCGTTGTTACCTA 147537
| | ||||| | | || | |||| |||| | || || | || || ||||| || |
Sbjct 8586134 ATAAAACTCGCCTTGTATATATATTAGAAGTATATGGTTCAATAGATTCATTGTTTCCAA 8586075
Query 147538 GAATCTGTGCAGTCGTTGCCGTCGGCATGTAAGCAATCAATAATGAATTGCGTAAGCCGT 147597
|||| || | || | ||| || ||||| |||||| |||||||||||||| | ||
Sbjct 8586074 GAATTTGAGATGTAGATGCTGTAGGCATTGGAGCAATTAATAATGAATTGCGAAGACCAA 8586015
Query 147598 ---GCATAGCCATTTCTCGCTTAAGCTCGTCCCAGTTCCAAAGATCATTCGATTGGTTAA 147654
| ||| |||||| |||| | ||||| | ||| | |||| | | | |||
Sbjct 8586014 AACGTATA---ATTTCTTGCTTTAAAATATCCCATTCCCATAAATCACTTG---GAATAA 8585961
Query 147655 TATTCCACAAATCAAACTGTAAAAGTCCACAACTTGCAGGGCTTCCATCGTAAGAATCGT 147714
|||||||| |||| |||| | || ||| ||| || | | | | | || |
Sbjct 8585960 CATTCCACATATCATACTGAAGAATTCCTTTGGATGCTGGAGAATCTTTGAATGTTTCAT 8585901
Query 147715 ATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGACTT--AGTGCACCATAATAAATAGT 147772
| ||| | | || | | ||| | | | ||| |||||||||| |||||||||
Sbjct 8585900 AACATCCATACTTCTTTGACAATTC-ACAGGAAG-CTTCAAGTGCACCATGATAAATAGT 8585843
Query 147773 TTCTGAAATCTTTTTATTTAAATCTCTAGCCTCTTG-GCTGTCGTAGGGCATATC-CAAA 147830
||| |||| ||| |||| | |||| |||| ||| | | ||| ||| ||| | || |
Sbjct 8585842 TTCAAAAATTTTTATATTAAGATCTTTAGCTTCTGGTGATGTGAAAGG--ATACCTCATA 8585785
Query 147831 ATGGCGAACGTATCCGCAAGTCCTTGAATACCGATACCGATGGGTCGGTGTCTGAAATTC 147890
| || ||||| ||||||||||||| ||| || || || || || || | | |||
Sbjct 8585784 AGCAAAAATGTATCAGCAAGTCCTTGAACACCAATTCCAATTGGACGATGCTTAAGATTT 8585725
Query 147891 GATGCTTGAGCGCTAGCCAACGGATAAAAATTCAAGTCGATAATTTTATTGAGATTATTG 147950
||| |||| | | ||||||||||| | || ||||||||||| | ||| |
Sbjct 8585724 GATAAACGAGCTTCTTCTAGTGGATAAAAATTAATATCAATAATTTTATTTAAATTTCTT 8585665
Query 147951 GTAACCACTCTAGATACATTGTAGAGCGACTTAAAGTCGAA-----GCTTTTAAACTGTT 148005
|| || | | | | |||| | ||| |||||||| || | |||| || ||
Sbjct 8585664 GTTACAATTTTTGTCACATCATGAAGCATTTTAAAGTCAAATGTAGGTTTTTTTTCTTTT 8585605
Query 148006 -TATTGGCAAAATTATTTACGGCAATCGAGGCCAAGTTACACACGGCCGTTTCTCGATTG 148064
|| |||| |||| | ||||| || || || ||||| || || | ||| |||
Sbjct 8585604 ATAACAACAAACATATTAAGTGCAATTGATGCTAAATTACAAACAGCAACT--TCGCTTG 8585547
Query 148065 TCG--CTATATTGAACGATTTCGGCACACAGATTGCTGTTTCGAATCACTCCCTCGtttt 148122
| | |||||||| ||||| | ||| ||||| || |||| ||| ||||
Sbjct 8585546 GAGAACAATATTGAATAATTTCAGTACATAGATTTGAACATCTAATCGTTCCTAAATTTT 8585487
Query 148123 tttGATTATTTTTATTGTTAACGTGATCTTTAAACATCATGTATGGAGCTCCGGTCTCGA 148182
||||||| ||||| ||| ||||||||| | | ||| |||||| || || || |
Sbjct 8585486 GTTGATTACTTTTACGATTACAATGATCTTTATAAACCATATATGGAATACCAGTTTCAA 8585427
Query 148183 CTTGAGTCTCAATAATTTT 148201
|||| ||| ||||||
Sbjct 8585426 TCTGAGATTCACAAATTTT 8585408
Score = 143 bits (158), Expect = 3e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || || || || |||||||| | ||||| |||| ||||| || |
Sbjct 10682514 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCC 10682573
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | || ||| ||||||| ||||||||||| || ||||| ||||||
Sbjct 10682574 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10682633
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|||||| | |||| | || |||||||| ||||||| |||| | ||||||||
Sbjct 10682634 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10682693
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| ||||| ||||| ||| ||||| |||| || | ||| | |||||
Sbjct 10682694 ATCCAAAAGGAATCAACTCTCCATTTGGTTCTTCGTCTTCGTGGAGG 10682740
Score = 140 bits (154), Expect = 3e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | ||||| || || ||||| ||||| | || || | ||| ||||| || |
Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | || ||| ||||||| ||||| ||||| || ||||| ||||||
Sbjct 10683030 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 10683089
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|||||| | || | | ||| |||||||| ||||||| |||| | ||||||||
Sbjct 10683090 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10683149
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| ||||| ||||| ||| | ||| |||| || | ||| | |||||
Sbjct 10683150 ATCCAAAAGGAATCAACTCTTCATTTGGTTCTTCGTCTTCGTGGAGG 10683196
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | ||||| || || ||||| ||||| | || || | ||| ||||| || |
Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| || | |||||| ||| ||| || || ||||| || || || ||||||
Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAA 10682177
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|||||| | || | | ||| |||||||| ||||||| |||| || ||||| ||
Sbjct 10682178 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682237
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| ||||||||||||||| | ||| |||| || | ||| | |||||
Sbjct 10682238 ATCCAAAAAGAATCTACTCTTCATTTGGTTCTTCGTCTTCGTGGAGG 10682284
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || || || || || || ||| | ||||| | || |||| | |
Sbjct 10681602 ATGCAAATTTTCGTTAAGACTTTGACAGGCAAAACTATCACTCTTGAGGTAGAGCCTTCC 10681661
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||| || || | ||||| ||||||| ||||||||||| || ||||| ||||||
Sbjct 10681662 GACACTATTGACAATGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10681721
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| ||| | |||| | || |||||||| ||||||| |||| | ||||||||
Sbjct 10681722 CAGAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10681781
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| ||||| ||||| ||| ||||| |||| || | ||| | |||||
Sbjct 10681782 ATCCAAAAGGAATCAACTCTCCATTTGGTTCTTCGTCTTCGTGGAGG 10681828
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| || || ||||| || ||| | || || | ||| | ||| ||
Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCT 10683257
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||| || || | |||||| ||||||| || || ||||| || ||||| ||||||
Sbjct 10683258 GACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCAA 10683317
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|||||| | |||| | ||| || ||||| || |||| |||| | || || |||
Sbjct 10683318 CAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAAC 10683377
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||||||||||| || ||| | ||| |||| || | ||| | |||||
Sbjct 10683378 ATTCAAAAAGAGTCAACTCTTCATTTGGTTCTCCGTCTTCGTGGAGG 10683424
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| || || ||||| || ||| | || || | ||| | ||| ||
Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10681889
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||| ||||| | |||||| ||| ||| || || ||||| || ||||| || |||
Sbjct 10681890 GACACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAA 10681949
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|||||| | |||| | || |||||||| ||||||| || | | || || |||
Sbjct 10681950 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAAC 10682009
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||||||||||| || ||| | || | || || | ||| | |||||
Sbjct 10682010 ATTCAAAAAGAGTCAACTCTTCACTTAGTTCTTCGTCTTCGTGGAGG 10682056
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| || || ||||| || ||| | || || | ||| | ||| ||
Sbjct 10682286 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10682345
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||| || || | || || ||||||| || || ||||| || ||||| ||||||
Sbjct 10682346 GACACTATTGACAACGTTAAGTCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 10682405
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|||||| | || | | ||| |||||||| ||||||| |||| || ||||| ||
Sbjct 10682406 CAAAGATTAATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682465
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| ||||| || || ||| | || | || || | ||| | |||||
Sbjct 10682466 ATCCAAAAGGAGTCAACTCTTCACTTAGTTCTTCGTCTTCGTGGAGG 10682512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478661592257200
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