Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq2 120 3e-22
>seq2
Length=16759152
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| || || ||||| ||||| | ||||| | ||||| || | |
Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | || ||| ||||||| ||||| ||||| || ||||| ||||||
Sbjct 10683030 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 10683089
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| ||| |||| | | ||| || ||||| ||||||| |||| | || |||||
Sbjct 10683090 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10683149
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|| ||||| ||||| || ||||||| ||
Sbjct 10683150 ATCCAAAAGGAATCAACTCTTCATTTGGT 10683178
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| || || ||||| ||||| | ||||| | ||||| || | |
Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | |||||| ||| ||| || || ||||| || || || ||||||
Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAA 10682177
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| ||| |||| | | ||| || ||||| ||||||| |||| || || || ||
Sbjct 10682178 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682237
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|| |||||||||||||| ||||||| ||
Sbjct 10682238 ATCCAAAAAGAATCTACTCTTCATTTGGT 10682266
Score = 114 bits (126), Expect = 1e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || ||||| || ||| | ||||| | ||||| || ||| |
Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAA-CCATC 10683256
Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||||| || || | |||||| ||||||| || || ||||| || ||||| |||||
Sbjct 10683257 TGACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCA 10683316
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
||| ||| | |||| | ||| |||||||| || |||| |||| | ||||| ||
Sbjct 10683317 ACAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAA 10683376
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199
|||||||||||| || || ||||||| ||
Sbjct 10683377 CATTCAAAAAGAGTCAACTCTTCATTTGGT 10683406
Score = 102 bits (112), Expect = 7e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || ||||| || ||| | ||||| | ||||| || ||| |
Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAA-CCATC 10681888
Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||||| ||||| | |||||| ||| ||| || || ||||| || ||||| || ||
Sbjct 10681889 TGACACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCA 10681948
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
||| ||| | |||| | || || ||||| ||||||| || | | ||||| ||
Sbjct 10681949 ACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAA 10682008
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199
|||||||||||| || || |||| |||||
Sbjct 10682009 CATTCAAAAAGAGTCAACTCTTCACTTAGT 10682038
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || || |||||||| | || || |||| || || | |
Sbjct 10682514 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCC 10682573
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | || ||| ||||||| ||||||||||| || ||||| ||||||
Sbjct 10682574 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10682633
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| ||| | |||| | || || ||||| ||||||| |||| | || |||||
Sbjct 10682634 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10682693
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|| ||||| ||||| || | ||||| ||
Sbjct 10682694 ATCCAAAAGGAATCAACTCTCCATTTGGT 10682722
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || || || || || || ||| | || || | || || ||| | |
Sbjct 10681602 ATGCAAATTTTCGTTAAGACTTTGACAGGCAAAACTATCACTCTTGAGGTAGAGCCTTCC 10681661
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || || | ||||| ||||||| ||||||||||| || ||||| ||||||
Sbjct 10681662 GACACTATTGACAATGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10681721
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|||||| | |||| | || || ||||| ||||||| |||| | || |||||
Sbjct 10681722 CAGAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10681781
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|| ||||| ||||| || | ||||| ||
Sbjct 10681782 ATCCAAAAGGAATCAACTCTCCATTTGGT 10681810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429935292620925
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |