Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2 120 3e-22 >seq2 Length=16759152 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || ||||| ||||| | ||||| | ||||| || | | Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| ||||||| ||||| ||||| || ||||| |||||| Sbjct 10683030 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 10683089 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | | ||| || ||||| ||||||| |||| | || ||||| Sbjct 10683090 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10683149 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| ||||| || ||||||| || Sbjct 10683150 ATCCAAAAGGAATCAACTCTTCATTTGGT 10683178 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || ||||| ||||| | ||||| | ||||| || | | Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| ||| ||| || || ||||| || || || |||||| Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAA 10682177 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | | ||| || ||||| ||||||| |||| || || || || Sbjct 10682178 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682237 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || |||||||||||||| ||||||| || Sbjct 10682238 ATCCAAAAAGAATCTACTCTTCATTTGGT 10682266 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || ||||| || ||| | ||||| | ||||| || ||| | Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAA-CCATC 10683256 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | |||||| ||||||| || || ||||| || ||||| ||||| Sbjct 10683257 TGACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCA 10683316 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||| | |||| | ||| |||||||| || |||| |||| | ||||| || Sbjct 10683317 ACAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAA 10683376 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||| || || ||||||| || Sbjct 10683377 CATTCAAAAAGAGTCAACTCTTCATTTGGT 10683406 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || ||||| || ||| | ||||| | ||||| || ||| | Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAA-CCATC 10681888 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| ||||| | |||||| ||| ||| || || ||||| || ||||| || || Sbjct 10681889 TGACACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCA 10681948 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||| | |||| | || || ||||| ||||||| || | | ||||| || Sbjct 10681949 ACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAA 10682008 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||| || || |||| ||||| Sbjct 10682009 CATTCAAAAAGAGTCAACTCTTCACTTAGT 10682038 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || |||||||| | || || |||| || || | | Sbjct 10682514 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCC 10682573 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| ||||||| ||||||||||| || ||||| |||||| Sbjct 10682574 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10682633 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| | |||| | || || ||||| ||||||| |||| | || ||||| Sbjct 10682634 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10682693 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| ||||| || | ||||| || Sbjct 10682694 ATCCAAAAGGAATCAACTCTCCATTTGGT 10682722 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || || || ||| | || || | || || ||| | | Sbjct 10681602 ATGCAAATTTTCGTTAAGACTTTGACAGGCAAAACTATCACTCTTGAGGTAGAGCCTTCC 10681661 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| ||||||| ||||||||||| || ||||| |||||| Sbjct 10681662 GACACTATTGACAATGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10681721 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| | |||| | || || ||||| ||||||| |||| | || ||||| Sbjct 10681722 CAGAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10681781 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| ||||| || | ||||| || Sbjct 10681782 ATCCAAAAGGAATCAACTCTCCATTTGGT 10681810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935292620925