Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq2 102 7e-17 >seq2 Length=16759152 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| || || | || || ||||||||||| | ||| || ||| | Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGA-ACCATC 10683256 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| | || ||| ||| ||| ||||| ||||| |||| ||||| Sbjct 10683257 TGACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCA 10683316 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | |||| ||| || || ||| | || |||| | ||| | | ||||| || Sbjct 10683317 ACAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAA 10683376 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||||||||||||| ||| | ||| |||| Sbjct 10683377 CATTCAAAAAGAGTCAACTCTTCATTTGGT 10683406 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||||||||| || | || ||||| || ||||| | ||| || | | Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || ||| ||||||| ||||| ||||| | || ||||| Sbjct 10682118 GACACCATT-GACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCA 10682176 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | || | ||| || |||||| | ||||||| | ||| | | || || || Sbjct 10682177 ACAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAA 10682236 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 || |||||||| |||||| | ||| |||| Sbjct 10682237 TATCCAAAAAGAATCTACTCTTCATTTGGT 10682266 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| || || | || || ||||| ||||| | ||| || ||| | Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAA-CCATC 10681888 Query 115346 -GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 |||||| | | |||| || ||| ||||||| ||||| ||||| |||| || | Sbjct 10681889 TGACACTATCG-ACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACC 10681947 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | |||||| | |||| ||| || |||||| | ||||||| | || | | ||||| | Sbjct 10681948 AACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACA 10682007 Query 115464 ACATTCAAAAAGAGTCTACT 115483 |||||||||||||||| ||| Sbjct 10682008 ACATTCAAAAAGAGTCAACT 10682027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425343300176200