Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq2 102 7e-17
>seq2
Length=16759152
Score = 102 bits (112), Expect = 7e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| |||||||| || || | || || ||||||||||| | ||| || ||| |
Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGA-ACCATC 10683256
Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
|||||| ||| | || ||| ||| ||| ||||| ||||| |||| |||||
Sbjct 10683257 TGACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCA 10683316
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
|||||| | |||| ||| || || ||| | || |||| | ||| | | ||||| ||
Sbjct 10683317 ACAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAA 10683376
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494
||||||||||||||| ||| | ||| ||||
Sbjct 10683377 CATTCAAAAAGAGTCAACTCTTCATTTGGT 10683406
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||||||||||||||| || | || ||||| || ||||| | ||| || | |
Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| || ||||| || ||| ||||||| ||||| ||||| | || |||||
Sbjct 10682118 GACACCATT-GACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCA 10682176
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
|||||| | || | ||| || |||||| | ||||||| | ||| | | || || ||
Sbjct 10682177 ACAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAA 10682236
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494
|| |||||||| |||||| | ||| ||||
Sbjct 10682237 TATCCAAAAAGAATCTACTCTTCATTTGGT 10682266
Score = 95.1 bits (104), Expect = 1e-14
Identities = 144/200 (72%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| |||||||| || || | || || ||||| ||||| | ||| || ||| |
Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAA-CCATC 10681888
Query 115346 -GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
|||||| | | |||| || ||| ||||||| ||||| ||||| |||| || |
Sbjct 10681889 TGACACTATCG-ACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACC 10681947
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
| |||||| | |||| ||| || |||||| | ||||||| | || | | ||||| |
Sbjct 10681948 AACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACA 10682007
Query 115464 ACATTCAAAAAGAGTCTACT 115483
|||||||||||||||| |||
Sbjct 10682008 ACATTCAAAAAGAGTCAACT 10682027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425343300176200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |