Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2 116 2e-21 seq20 86.0 4e-12 >seq2 Length=16759152 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 || || |||||||| ||| |||||||| ||||||||||| | | | | | || || Sbjct 10682038 ACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTCA 10681979 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||| ||||| |||| | |||||| || | |||| ||||| || || | Sbjct 10681978 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGA 10681919 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 |||||| || || || | || ||| || ||||||||| | |||||||||||| Sbjct 10681918 ATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTA 10681859 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| || || || |||||||| Sbjct 10681858 CCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 || || |||||||| ||||||||| |||||||| ||||| | | | | | || || Sbjct 10682494 ACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCA 10682435 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||||||||| |||| | ||||||||| | || | ||||| || || | Sbjct 10682434 AGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGA 10682375 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| ||| || || | | ||| || ||||||||| | |||||||||||| Sbjct 10682374 ATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTA 10682315 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| || || || |||||||| Sbjct 10682314 CCTGTTAAGGTCTTAACAAAAATCTGCAT 10682286 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||||||||| ||| |||||||| ||||||||||| | | | | || || Sbjct 10683406 ACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCATCCTCA 10683347 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||| ||||||||||| |||| | ||||||||| | |||| ||||| || || | Sbjct 10683346 AGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTATCTTGA 10683287 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| || ||||| | | ||| || ||||||||| | ||||| |||||| Sbjct 10683286 ATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTTTA 10683227 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| || || || |||||||| Sbjct 10683226 CCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 || || |||||||| ||| ||||| |||||||||||||| | | | | | || || Sbjct 10682950 ACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTCA 10682891 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||| ||||| |||| | |||||| || | || | ||||| || || Sbjct 10682890 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGG 10682831 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| || ||||| | | || || | ||||||||| | |||||||||||| Sbjct 10682830 ATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGTTTTA 10682771 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| || || || |||||||| Sbjct 10682770 CCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| ||||| |||||||| ||||| || ||||| | | | | | || || Sbjct 10681810 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10681751 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||| ||||| |||| | |||||||| | || | ||||||||||| | Sbjct 10681750 AGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 10681691 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| ||| ||||| | | ||| || | || || || | || |||||||| Sbjct 10681690 ATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTTG 10681631 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || ||||| || || ||||| || |||||| || Sbjct 10681630 CCTGTCAAAGTCTTAACGAAAATTTGCATGGTT 10681598 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| ||||| |||||||| ||||| || ||||| | | | | | || || Sbjct 10682722 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10682663 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||| ||||| |||| | ||||||||| | || | ||||||||||| | Sbjct 10682662 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 10682603 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| || ||||| | || || || ||| || || | || || || || Sbjct 10682602 ATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATGGTCTTT 10682543 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || || ||||| |||||||| Sbjct 10682542 CCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||||||||| |||||||| ||||| || ||||| | | | | | || || Sbjct 10683178 ACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10683119 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||||||||| || | | ||||||||| | || | ||||| ||||| | Sbjct 10683118 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGA 10683059 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| || ||||| | || || || ||| ||||| | |||||||| || Sbjct 10683058 ATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTTT 10682999 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || || ||||| Sbjct 10682998 CCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||||||||| || ||||| |||||||| ||||| | | | | | || || Sbjct 10682266 ACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCA 10682207 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||||||||| || | | ||||||||| | || | ||||| || || | Sbjct 10682206 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCTTGA 10682147 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 |||||| || ||||| | | || || ||| ||||| | |||||||| || Sbjct 10682146 ATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTTT 10682087 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || || ||||| Sbjct 10682086 CCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG-CGCATCTGCGC 6232 || || ||||||||||||| || | | |||||| |||||||||||| || || || Sbjct 13252137 AATGTTAATCGTAATGTGGTTGATCCATACTACCGTTACAAAATGCCGAAGCTTC-AAGC 13252195 Query 6233 CAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGC 6292 || || || ||||| || || || || || || ||||| | || ||| |||| | || Sbjct 13252196 TAAAGTTGAAGGTAAAGGTAATGGAATCAAGACAGTCATAGCTAATATGGTTGAAATTGC 13252255 Query 6293 TAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGC 6352 |||||| || | | || | | || || || ||||| || || || ||||| || || Sbjct 13252256 TAAGGCTCTAGAGAGACCACCAATGTATCCAACAAAATACTTTGGCTGTGAACTAGGAGC 13252315 Query 6353 TCAGACGCAGTTTGAT 6368 ||| || | |||||| Sbjct 13252316 TCAAACCAATTTTGAT 13252331 >seq20 Length=36351 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||| ||||||| || |||||||||| | |||||||| Sbjct 20517 AAGCCCGTTCCCTTGGCTGTGATTTCGCTGAATGGTAGATAGGGACAGTAGGAATCTCGT 20458 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||| |||||||| ||||| ||||| Sbjct 20457 TAATCCATTCGTGCGCGTCGGAAATTACCCGACGA 20423 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||| ||||||| || |||||||||| | |||||||| Sbjct 21246 AAGCCCGTTCCCTTGGCTGTGATTTCGCTGAATGGTAGATAGGGACAGTAGGAATCTCGT 21305 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||| |||||||| ||||| ||||| Sbjct 21306 TAATCCATTCGTGCGCGTCGGAAATTACCCGACGA 21340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946648907185