Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq2 116 2e-21
seq20 86.0 4e-12
>seq2
Length=16759152
Score = 116 bits (128), Expect = 2e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|| || |||||||| ||| |||||||| ||||||||||| | | | | | || ||
Sbjct 10682038 ACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTCA 10681979
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| ||||||||| ||||| |||| | |||||| || | |||| ||||| || || |
Sbjct 10681978 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGA 10681919
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|||||| || || || | || ||| || ||||||||| | ||||||||||||
Sbjct 10681918 ATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTA 10681859
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || ||||| || || || ||||||||
Sbjct 10681858 CCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830
Score = 116 bits (128), Expect = 2e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|| || |||||||| ||||||||| |||||||| ||||| | | | | | || ||
Sbjct 10682494 ACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCA 10682435
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| ||||||||||||||| |||| | ||||||||| | || | ||||| || || |
Sbjct 10682434 AGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGA 10682375
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| ||| ||| || || | | ||| || ||||||||| | ||||||||||||
Sbjct 10682374 ATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTA 10682315
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || ||||| || || || ||||||||
Sbjct 10682314 CCTGTTAAGGTCTTAACAAAAATCTGCAT 10682286
Score = 116 bits (128), Expect = 2e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||||||||||||| ||| |||||||| ||||||||||| | | | | || ||
Sbjct 10683406 ACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCATCCTCA 10683347
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| ||| ||||||||||| |||| | ||||||||| | |||| ||||| || || |
Sbjct 10683346 AGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTATCTTGA 10683287
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| ||| || ||||| | | ||| || ||||||||| | ||||| ||||||
Sbjct 10683286 ATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTTTA 10683227
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || ||||| || || || ||||||||
Sbjct 10683226 CCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198
Score = 102 bits (112), Expect = 5e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|| || |||||||| ||| ||||| |||||||||||||| | | | | | || ||
Sbjct 10682950 ACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTCA 10682891
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| ||||||||| ||||| |||| | |||||| || | || | ||||| || ||
Sbjct 10682890 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGG 10682831
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| ||| || ||||| | | || || | ||||||||| | ||||||||||||
Sbjct 10682830 ATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGTTTTA 10682771
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || ||||| || || || ||||||||
Sbjct 10682770 CCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||||||| ||||| |||||||| ||||| || ||||| | | | | | || ||
Sbjct 10681810 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10681751
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| ||||||||| ||||| |||| | |||||||| | || | ||||||||||| |
Sbjct 10681750 AGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 10681691
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| ||| ||| ||||| | | ||| || | || || || | || ||||||||
Sbjct 10681690 ATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTTG 10681631
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321
|| ||||| || || ||||| || |||||| ||
Sbjct 10681630 CCTGTCAAAGTCTTAACGAAAATTTGCATGGTT 10681598
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||||||| ||||| |||||||| ||||| || ||||| | | | | | || ||
Sbjct 10682722 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10682663
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| ||||||||| ||||| |||| | ||||||||| | || | ||||||||||| |
Sbjct 10682662 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 10682603
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| ||| || ||||| | || || || ||| || || | || || || ||
Sbjct 10682602 ATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATGGTCTTT 10682543
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| ||||| || || ||||| ||||||||
Sbjct 10682542 CCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||||||||||||| |||||||| ||||| || ||||| | | | | | || ||
Sbjct 10683178 ACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10683119
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| ||||||||||||||| || | | ||||||||| | || | ||||| ||||| |
Sbjct 10683118 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGA 10683059
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| ||| || ||||| | || || || ||| ||||| | |||||||| ||
Sbjct 10683058 ATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTTT 10682999
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || || || || || || || |||||
Sbjct 10682998 CCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970
Score = 89.7 bits (98), Expect = 3e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||||||||||||| || ||||| |||||||| ||||| | | | | | || ||
Sbjct 10682266 ACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCA 10682207
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| ||||||||||||||| || | | ||||||||| | || | ||||| || || |
Sbjct 10682206 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCTTGA 10682147
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|||||| || ||||| | | || || ||| ||||| | |||||||| ||
Sbjct 10682146 ATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTTT 10682087
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || || || || || || || |||||
Sbjct 10682086 CCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058
Score = 86.0 bits (94), Expect = 4e-12
Identities = 138/196 (70%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG-CGCATCTGCGC 6232
|| || ||||||||||||| || | | |||||| |||||||||||| || || ||
Sbjct 13252137 AATGTTAATCGTAATGTGGTTGATCCATACTACCGTTACAAAATGCCGAAGCTTC-AAGC 13252195
Query 6233 CAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGC 6292
|| || || ||||| || || || || || || ||||| | || ||| |||| | ||
Sbjct 13252196 TAAAGTTGAAGGTAAAGGTAATGGAATCAAGACAGTCATAGCTAATATGGTTGAAATTGC 13252255
Query 6293 TAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGC 6352
|||||| || | | || | | || || || ||||| || || || ||||| || ||
Sbjct 13252256 TAAGGCTCTAGAGAGACCACCAATGTATCCAACAAAATACTTTGGCTGTGAACTAGGAGC 13252315
Query 6353 TCAGACGCAGTTTGAT 6368
||| || | ||||||
Sbjct 13252316 TCAAACCAATTTTGAT 13252331
>seq20
Length=36351
Score = 86.0 bits (94), Expect = 4e-12
Identities = 76/95 (80%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||| ||||||| || |||||||||| | ||||||||
Sbjct 20517 AAGCCCGTTCCCTTGGCTGTGATTTCGCTGAATGGTAGATAGGGACAGTAGGAATCTCGT 20458
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||| |||||||| ||||| |||||
Sbjct 20457 TAATCCATTCGTGCGCGTCGGAAATTACCCGACGA 20423
Score = 86.0 bits (94), Expect = 4e-12
Identities = 76/95 (80%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||| ||||||| || |||||||||| | ||||||||
Sbjct 21246 AAGCCCGTTCCCTTGGCTGTGATTTCGCTGAATGGTAGATAGGGACAGTAGGAATCTCGT 21305
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||| |||||||| ||||| |||||
Sbjct 21306 TAATCCATTCGTGCGCGTCGGAAATTACCCGACGA 21340
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334946648907185
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |