Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 125 6e-24
>seq2
Length=16759152
Score = 125 bits (138), Expect = 6e-24
Identities = 162/219 (74%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
||| |||||||| || || ||||||||||| || ||| | ||||| | || || ||| |
Sbjct 10681598 AACCATGCAAATTTTCGTTAAGACTTTGACAGGCAAAACTATCACTCTTGAGGTAGAGCC 10681657
Query 25055 GTCTGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACC 25111
|| |||||||| || || || ||| |||| | ||| ||||||||||| ||||| ||
Sbjct 10681658 TTCCGACACTATTGA--CAATGTCAAGTCAAAGATTCA-AGACAAAGAAGGAATTCCTCC 10681714
Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171
|| |||||| | | |||||||| || |||||| | ||||||| | ||| | ||
Sbjct 10681715 AGATCAACAGAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGA 10681774
Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| ||||| ||||| || || ||||| || ||
Sbjct 10681775 CTATAATATCCAAAAGGAATCAACTCTCCATTTGGTTCT 10681813
Score = 122 bits (134), Expect = 8e-23
Identities = 158/216 (73%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| || || |||||| | || || | ||||| || | |||
Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10681889
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||||||||| |||| || |||||| ||| || || ||||| || || || ||
Sbjct 10681890 GACACTATCGACAACGTCA---AATCAAAAATTCA-AGATAAGGAAGGAATCCCTCCAGA 10681945
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|||||| | | |||||||| || |||||| | ||||||| | ||| | |||||
Sbjct 10681946 CCAACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTA 10682005
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| ||||||||||| || || || || ||||| ||
Sbjct 10682006 CAACATTCAAAAAGAGTCAACTCTTCACTTAGTTCT 10682041
Score = 114 bits (126), Expect = 1e-20
Identities = 156/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| |||||||| || || || | || || | ||||| || | ||
Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || || || || || |||||| ||| || || ||||| |||||||| ||
Sbjct 10682118 GACACCATTGA--CAATGTCAAATCAAAAATTCAA-GATAAGGAAGGAATTCCACCAGAT 10682174
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
||||| | | || |||||||| |||||| | ||||||| | ||| | || |||
Sbjct 10682175 CAACAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTAC 10682234
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| ||||||||||| || || ||||| || ||
Sbjct 10682235 AATATCCAAAAAGAATCTACTCTTCATTTGGTTCT 10682269
Score = 114 bits (126), Expect = 1e-20
Identities = 156/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||||||||| || || ||||||| |||| || || | ||
Sbjct 10682514 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCC 10682573
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| || || || |||| | ||| ||||||||||| ||||| || ||
Sbjct 10682574 GACACCATCGA--CAATGTTAAATCAAAGATTCAA-GACAAAGAAGGAATTCCTCCAGAT 10682630
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
||||| | | |||||||| || |||||| | ||||||| | ||| | || ||
Sbjct 10682631 CAACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTAT 10682690
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| ||||| ||||| || || ||||| || ||
Sbjct 10682691 AATATCCAAAAGGAATCAACTCTCCATTTGGTTCT 10682725
Score = 111 bits (122), Expect = 1e-19
Identities = 154/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| || || |||||| | || || | ||||| || | |||
Sbjct 10682742 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCTTCT 10682801
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| || || || || || ||| ||| || || ||||| ||||| || ||||
Sbjct 10682802 GACACCATTGA--CAATGTCAAATCAAAGATCCAAGATAAGGAAGGAATTCCTCCAGACC 10682859
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
|||| | | |||||||| || |||||| | ||||||| | ||| | |||||||
Sbjct 10682860 AACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACA 10682919
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||| |||||||| || || || || ||||| ||
Sbjct 10682920 ATATCCAAAAAGAGTCAACTCTTCACTTAGTTCT 10682953
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| || || |||||| |||| || | ||||| || | |||
Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCT 10683257
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|||||||| || |||| || |||| | ||| || || ||||| || || || ||
Sbjct 10683258 GACACTATTGATAATGTCA---AATCAAAGATTCAA-GATAAGGAAGGAATCCCTCCAGA 10683313
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||||| | | ||||||||||| || ||| | || |||| | || | |||||
Sbjct 10683314 TCAACAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTA 10683373
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| ||||||||||| || || || ||||| || ||
Sbjct 10683374 CAACATTCAAAAAGAGTCAACTCTTCATTTGGTTCT 10683409
Score = 102 bits (112), Expect = 7e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| || || |||||| | || || | ||||| || | |||
Sbjct 10682286 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10682345
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||||| || | ||| |||| | ||| || || ||||| ||||| || || ||
Sbjct 10682346 GACACTATTGACAACGTTAAGTCAAAGATTCA-AGATAAGGAAGGAATTCCTCCAGATCA 10682404
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | || |||||||| |||||| | ||||||| | ||| | || |||||
Sbjct 10682405 ACAAAGATTAATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAA 10682464
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| ||||| || || || || || ||||| ||
Sbjct 10682465 TATCCAAAAGGAGTCAACTCTTCACTTAGTTCT 10682497
Score = 95.1 bits (104), Expect = 1e-14
Identities = 109/144 (76%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || |||||| | || ||||| ||||||| | || || ||| | ||
Sbjct 15965307 AATGCAGATTTTCGTTAAGACTCTTACTGGTAAGACCATCACTCTTGAGGTCGAGCCATC 15965366
Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| ||||| | || |||| |||| ||| ||||||||||| || ||||| ||
Sbjct 15965367 AGACACCATCGAA--AATGTAAAAGCCAAAATTCAA-GACAAAGAAGGAATCCCACCAGA 15965423
Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138
|||||| || |||||||||||||
Sbjct 15965424 CCAACAACGTCTTATTTTTGCCGG 15965447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327287040025
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |