Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2 125 6e-24 >seq2 Length=16759152 Score = 125 bits (138), Expect = 6e-24 Identities = 162/219 (74%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| |||||||| || || ||||||||||| || ||| | ||||| | || || ||| | Sbjct 10681598 AACCATGCAAATTTTCGTTAAGACTTTGACAGGCAAAACTATCACTCTTGAGGTAGAGCC 10681657 Query 25055 GTCTGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 || |||||||| || || || ||| |||| | ||| ||||||||||| ||||| || Sbjct 10681658 TTCCGACACTATTGA--CAATGTCAAGTCAAAGATTCA-AGACAAAGAAGGAATTCCTCC 10681714 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || |||||| | | |||||||| || |||||| | ||||||| | ||| | || Sbjct 10681715 AGATCAACAGAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGA 10681774 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| ||||| ||||| || || ||||| || || Sbjct 10681775 CTATAATATCCAAAAGGAATCAACTCTCCATTTGGTTCT 10681813 Score = 122 bits (134), Expect = 8e-23 Identities = 158/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| || || |||||| | || || | ||||| || | ||| Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10681889 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| |||| || |||||| ||| || || ||||| || || || || Sbjct 10681890 GACACTATCGACAACGTCA---AATCAAAAATTCA-AGATAAGGAAGGAATCCCTCCAGA 10681945 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | |||||||| || |||||| | ||||||| | ||| | ||||| Sbjct 10681946 CCAACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTA 10682005 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||||||||| || || || || ||||| || Sbjct 10682006 CAACATTCAAAAAGAGTCAACTCTTCACTTAGTTCT 10682041 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||||| || || || | || || | ||||| || | || Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || || |||||| ||| || || ||||| |||||||| || Sbjct 10682118 GACACCATTGA--CAATGTCAAATCAAAAATTCAA-GATAAGGAAGGAATTCCACCAGAT 10682174 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | || |||||||| |||||| | ||||||| | ||| | || ||| Sbjct 10682175 CAACAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTAC 10682234 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||||||||| || || ||||| || || Sbjct 10682235 AATATCCAAAAAGAATCTACTCTTCATTTGGTTCT 10682269 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || ||||||| |||| || || | || Sbjct 10682514 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCC 10682573 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || || |||| | ||| ||||||||||| ||||| || || Sbjct 10682574 GACACCATCGA--CAATGTTAAATCAAAGATTCAA-GACAAAGAAGGAATTCCTCCAGAT 10682630 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || |||||| | ||||||| | ||| | || || Sbjct 10682631 CAACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTAT 10682690 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| ||||| || || ||||| || || Sbjct 10682691 AATATCCAAAAGGAATCAACTCTCCATTTGGTTCT 10682725 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| || || |||||| | || || | ||||| || | ||| Sbjct 10682742 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCTTCT 10682801 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || || ||| ||| || || ||||| ||||| || |||| Sbjct 10682802 GACACCATTGA--CAATGTCAAATCAAAGATCCAAGATAAGGAAGGAATTCCTCCAGACC 10682859 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | | |||||||| || |||||| | ||||||| | ||| | ||||||| Sbjct 10682860 AACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACA 10682919 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| |||||||| || || || || ||||| || Sbjct 10682920 ATATCCAAAAAGAGTCAACTCTTCACTTAGTTCT 10682953 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| || || |||||| |||| || | ||||| || | ||| Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCT 10683257 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| || |||| | ||| || || ||||| || || || || Sbjct 10683258 GACACTATTGATAATGTCA---AATCAAAGATTCAA-GATAAGGAAGGAATCCCTCCAGA 10683313 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | ||||||||||| || ||| | || |||| | || | ||||| Sbjct 10683314 TCAACAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTA 10683373 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||||||||| || || || ||||| || || Sbjct 10683374 CAACATTCAAAAAGAGTCAACTCTTCATTTGGTTCT 10683409 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| || || |||||| | || || | ||||| || | ||| Sbjct 10682286 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10682345 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| |||| | ||| || || ||||| ||||| || || || Sbjct 10682346 GACACTATTGACAACGTTAAGTCAAAGATTCA-AGATAAGGAAGGAATTCCTCCAGATCA 10682404 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || |||||||| |||||| | ||||||| | ||| | || ||||| Sbjct 10682405 ACAAAGATTAATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAA 10682464 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| || || || || || ||||| || Sbjct 10682465 TATCCAAAAGGAGTCAACTCTTCACTTAGTTCT 10682497 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || |||||| | || ||||| ||||||| | || || ||| | || Sbjct 15965307 AATGCAGATTTTCGTTAAGACTCTTACTGGTAAGACCATCACTCTTGAGGTCGAGCCATC 15965366 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| | || |||| |||| ||| ||||||||||| || ||||| || Sbjct 15965367 AGACACCATCGAA--AATGTAAAAGCCAAAATTCAA-GACAAAGAAGGAATCCCACCAGA 15965423 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 |||||| || ||||||||||||| Sbjct 15965424 CCAACAACGTCTTATTTTTGCCGG 15965447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327287040025