Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 298 6e-76 >seq2 Length=16759152 Score = 298 bits (330), Expect = 6e-76 Identities = 547/790 (69%), Gaps = 21/790 (3%) Strand=Plus/Minus Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802 |||||||| ||||| | |||||| ||| || | || || ||||||||| || Sbjct 14764796 TAGAAATCGGCATCCAATGTAAAAACACGTTC---TTCATCTGTAGACATAACACCGAAT 14764740 Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 || || ||||| ||||||||| |||||||||||||| ||||| || | || || | Sbjct 14764739 TTCTGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAAT---A 14764683 Query 92863 TTCACTAGTGATT-----GGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTAC 92917 || || | | | || ||||| | |||||| | |||| | | || || | || Sbjct 14764682 TTAACCATAAAATCAAAGGGGTTCTTAACATTATAA-AGTTTTGAACAATTAAGTTCCAC 14764624 Query 92918 -AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 || || ||||||||| |||| || || | |||| ||| | |||||||| | Sbjct 14764623 CAACAAATGGTCAGCTACATATTCAATATATGTACACATTAAACGTGAGTTCATTCCAAT 14764564 Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 | | ||||| ||||| || || | | | || || || || |||| || | ||| | Sbjct 14764563 CATATCAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCAACTGCATTTTTAAT 14764504 Query 93037 GATTTCTATTACTC-TACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG 93095 |||||| ||| | | || | | |||||| | | | | ||| | |||| | ||| | Sbjct 14764503 AATTTCTTTTATACGTTCT-TCAGATGGTTTGTTTTCAAGGTAACTAAACATAAGGCAGG 14764445 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT--AAACC 93153 | || || ||||| || || |||| ||| ||||| |||||| |||||| || || Sbjct 14764444 CGAAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTG--GAATGTGTCAATCC 14764387 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213 ||| | || || |||||||| ||||||||||| |||||||| ||||||||| || || Sbjct 14764386 TGGCATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAAGAAGAT 14764327 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA-CTGCTGA 93272 |||||| || |||||||| || | || ||||| ||||| | || ||| | || || Sbjct 14764326 ACCTTCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATTCTTATCAGC-GA 14764268 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332 ||||| ||||||||||||| |||||||| | ||| | || | || | ||| |||| Sbjct 14764267 TCCATCTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTAAAGCATTAA 14764208 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 | || | || ||||| || ||||| || || ||||| | |||||||| | Sbjct 14764207 AAAGTTTCATTCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGTTTTGAATACATCT 14764148 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 || || | ||| ||||| ||||||||||| || ||||| | | || || | || | Sbjct 14764147 CACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCTCGGGAATTT 14764088 Query 93453 GCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaa 93512 | ||||||| |||||||||||| || | ||| ||||| || |||||||| || || |||| Sbjct 14764087 GAACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAGAAGCGGCAA 14764028 Query 93513 aaaaaGCCAA 93522 | ||||| || Sbjct 14764027 AGAAAGCTAA 14764018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859860297400