Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq2 298 6e-76
>seq2
Length=16759152
Score = 298 bits (330), Expect = 6e-76
Identities = 547/790 (69%), Gaps = 21/790 (3%)
Strand=Plus/Minus
Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802
|||||||| ||||| | |||||| ||| || | || || ||||||||| ||
Sbjct 14764796 TAGAAATCGGCATCCAATGTAAAAACACGTTC---TTCATCTGTAGACATAACACCGAAT 14764740
Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862
|| || ||||| ||||||||| |||||||||||||| ||||| || | || || |
Sbjct 14764739 TTCTGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAAT---A 14764683
Query 92863 TTCACTAGTGATT-----GGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTAC 92917
|| || | | | || ||||| | |||||| | |||| | | || || | ||
Sbjct 14764682 TTAACCATAAAATCAAAGGGGTTCTTAACATTATAA-AGTTTTGAACAATTAAGTTCCAC 14764624
Query 92918 -AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976
|| || ||||||||| |||| || || | |||| ||| | |||||||| |
Sbjct 14764623 CAACAAATGGTCAGCTACATATTCAATATATGTACACATTAAACGTGAGTTCATTCCAAT 14764564
Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036
| | ||||| ||||| || || | | | || || || || |||| || | ||| |
Sbjct 14764563 CATATCAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCAACTGCATTTTTAAT 14764504
Query 93037 GATTTCTATTACTC-TACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG 93095
|||||| ||| | | || | | |||||| | | | | ||| | |||| | ||| |
Sbjct 14764503 AATTTCTTTTATACGTTCT-TCAGATGGTTTGTTTTCAAGGTAACTAAACATAAGGCAGG 14764445
Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT--AAACC 93153
| || || ||||| || || |||| ||| ||||| |||||| |||||| || ||
Sbjct 14764444 CGAAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTG--GAATGTGTCAATCC 14764387
Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213
||| | || || |||||||| ||||||||||| |||||||| ||||||||| || ||
Sbjct 14764386 TGGCATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAAGAAGAT 14764327
Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA-CTGCTGA 93272
|||||| || |||||||| || | || ||||| ||||| | || ||| | || ||
Sbjct 14764326 ACCTTCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATTCTTATCAGC-GA 14764268
Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332
||||| ||||||||||||| |||||||| | ||| | || | || | ||| ||||
Sbjct 14764267 TCCATCTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTAAAGCATTAA 14764208
Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392
| || | || ||||| || ||||| || || ||||| | |||||||| |
Sbjct 14764207 AAAGTTTCATTCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGTTTTGAATACATCT 14764148
Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452
|| || | ||| ||||| ||||||||||| || ||||| | | || || | || |
Sbjct 14764147 CACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCTCGGGAATTT 14764088
Query 93453 GCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaa 93512
| ||||||| |||||||||||| || | ||| ||||| || |||||||| || || ||||
Sbjct 14764087 GAACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAGAAGCGGCAA 14764028
Query 93513 aaaaaGCCAA 93522
| ||||| ||
Sbjct 14764027 AGAAAGCTAA 14764018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556859860297400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |