Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 170 4e-37 seq1 86.0 1e-11 >seq2 Length=16759152 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | || ||||| || || ||||||||||| ||||| ||||| || Sbjct 10682056 CCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAA 10681997 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || ||||| |||||||| | || || || || || || | |||||||||||| || || Sbjct 10681996 AGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGG 10681937 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| |||||||| |||| |||||| ||||| ||||| | || ||| ||| Sbjct 10681936 ATTCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACT 10681877 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || ||||| || || | |||||| || || |||||||| Sbjct 10681876 TCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | ||||| || || || ||||||||||| ||||| ||||| || Sbjct 10683424 CCTCCACGAAGACGGAGAACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAA 10683365 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| || ||||| || | ||||| ||||| || || | ||||||||| || || || Sbjct 10683364 AGTGTTCTTCCATCCTCAAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGG 10683305 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| ||||||||||||| ||||| || || ||||| | || ||| ||| Sbjct 10683304 ATTCCTTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACT 10683245 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || |||||||| || || | |||||| || || |||||||| Sbjct 10683244 TCAAGAGTAATGGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | ||||| || || || || ||||||||||| || || || ||| Sbjct 10682284 CCTCCACGAAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAG 10682225 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || ||||| || || | ||||||||| || |||||| Sbjct 10682224 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGA 10682165 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| |||||||| |||| ||||| || |||||||| | || ||||||| Sbjct 10682164 ATTCCTTCCTTATCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACT 10682105 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || ||||| || | |||||||| || || ||||| Sbjct 10682104 TCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | || ||||| || || ||||| |||||||| || || || ||| Sbjct 10682512 CCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAG 10682453 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || ||||| || || | ||||||||| || || ||| Sbjct 10682452 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGA 10682393 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| ||||||||||||| ||| ||| || || ||||| | || ||| ||| Sbjct 10682392 ATTCCTTCCTTATCTTGAATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAACT 10682333 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || ||||| || || | |||||| || || |||||||| Sbjct 10682332 TCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682286 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | ||||| || || || || || |||||||| ||||| || || Sbjct 10682740 CCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10682681 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || || || || || | ||||||||| || || ||| Sbjct 10682680 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGA 10682621 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||||||||||| || || ||||||||||| | || |||||| Sbjct 10682620 ATTCCTTCTTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACC 10682561 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| ||||| || | ||||| ||||| |||||||| Sbjct 10682560 TCGAGAGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | || ||||| || || |||||||||||||| || ||||| ||| Sbjct 10682968 CCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAG 10682909 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || || || || || | |||||||||||| || ||| Sbjct 10682908 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGA 10682849 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| ||||| ||||||| ||||| || |||||||| | | ||| ||| Sbjct 10682848 ATTCCTTCCTTATCTTGGATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCAACT 10682789 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || ||||| || || | |||||| || || |||||||| Sbjct 10682788 TCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | ||||| || || || || || |||||||| ||||| || || Sbjct 10683196 CCTCCACGAAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10683137 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || ||||| || || | ||||||||| || || ||| Sbjct 10683136 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 10683077 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||||| || || ||||||||||| | || ||||||| Sbjct 10683076 ATTCCTTCCTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACT 10683017 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || ||||| || | |||||||| || || ||||| Sbjct 10683016 TCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | ||||| || || || || || |||||||| ||||| || || Sbjct 10681828 CCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10681769 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || || || || || | ||| ||||| || || ||| Sbjct 10681768 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGA 10681709 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||||||||||| |||||| || || ||||| | | ||||| Sbjct 10681708 ATTCCTTCTTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACC 10681649 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 10681648 TCAAGAGTGATAGTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || || | ||||||||| ||||| || ||||| ||||||||||| || || Sbjct 15965447 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCT 15965388 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || ||||||||||||| || || || || | |||||||| || || || || Sbjct 15965387 TTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAAGA 15965328 Query 68442 GTCTTGACGAATATCTGCATT 68462 ||||| ||||| ||||||||| Sbjct 15965327 GTCTTAACGAAAATCTGCATT 15965307 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 9214714 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 9214773 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 9214774 CCCGCATCGGGC 9214785 >seq1 Length=11693564 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 6984073 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 6984132 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 6984133 CCCGCATCGGGC 6984144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620844762200