Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq2 113 4e-20
>seq2
Length=16759152
Score = 113 bits (124), Expect = 4e-20
Identities = 168/237 (71%), Gaps = 1/237 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | ||| ||||| | || ||||| ||||| || || || ||
Sbjct 10681831 ATACCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCA 10681772
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| | ||||||||||||||| ||||| | || | | |||||| || |||
Sbjct 10681771 GAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGA 10681712
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||||||||| ||||||| || | | |||| ||||||| | ||
Sbjct 10681711 GGAATTCCTTCTTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCT 10681652
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAA 114389
|| || | || | |||||||| |||| ||| || || ||||| ||||||| ||||
Sbjct 10681651 ACCTCAAGAGTGATAGTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCATGG-TTAA 10681596
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | ||| ||||| | || ||||| ||||| || || || ||
Sbjct 10682743 ATACCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCA 10682684
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| | ||||||||||||||| ||||| | || | | ||||| || |||
Sbjct 10682683 GAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGA 10682624
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||||||||| ||||||| ||| | | || | |||||||| | |||
Sbjct 10682623 GGAATTCCTTCTTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCT 10682564
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || || || |||| ||| || || |||||||||||
Sbjct 10682563 ACCTCGAGAGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | |||||| || | || || |||||||| || ||||||||
Sbjct 10682971 ATACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCA 10682912
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| | ||||||||||||||| ||||| | || | | |||||||| |||
Sbjct 10682911 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGA 10682852
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| || || |||||| ||| | | |||| |||||| | | |||
Sbjct 10682851 GGAATTCCTTCCTTATCTTGGATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCA 10682792
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | ||||| || || | || || ||||||||||||||
Sbjct 10682791 ACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | |||||| || | || || ||||||||||||||||||||
Sbjct 10682059 ATACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCA 10682000
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| | ||||||||||||||| ||||| | || | | |||||||| |||
Sbjct 10681999 GAAAGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGA 10681940
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||| || || ||| ||| ||| | | || | ||||| | | |||
Sbjct 10681939 GGGATTCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCA 10681880
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | ||||| || || | || || ||||||||||||||
Sbjct 10681879 ACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | ||| ||||| | |||||||||||||| || ||||| ||
Sbjct 10682287 ATACCTCCACGAAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCA 10682228
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| | ||||||||||||||| || || |||| | | ||||| || ||
Sbjct 10682227 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGT 10682168
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| || || ||| ||| ||| | | |||| |||||||| | |||
Sbjct 10682167 GGAATTCCTTCCTTATCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCT 10682108
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || || || || | ||| || |||||||| |||||
Sbjct 10682107 ACTTCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | ||| ||||| | || ||||| ||||| || || || ||
Sbjct 10683199 ATACCTCCACGAAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCA 10683140
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| | ||||||||||||||| || || |||| | | ||||| || |||
Sbjct 10683139 GAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGA 10683080
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| ||||| ||||||| ||| | | || | |||||||| | |||
Sbjct 10683079 GGAATTCCTTCCTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCT 10683020
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || || || || | ||| || |||||||| |||||
Sbjct 10683019 ACTTCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | |||||| || | || || || ||||| || ||||| ||
Sbjct 10682515 ATACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCA 10682456
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| | ||||||||||||||| || || |||| | | ||||| || |||
Sbjct 10682455 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGA 10682396
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| || || ||||||| || | | |||| ||||| | | |||
Sbjct 10682395 GGAATTCCTTCCTTATCTTGAATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCA 10682336
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | ||||| || || | || || ||||||||||||||
Sbjct 10682335 ACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682286
Score = 91.5 bits (100), Expect = 1e-13
Identities = 165/240 (69%), Gaps = 1/240 (0%)
Strand=Plus/Minus
Query 114144 CATTTACAAATA-CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAAT 114202
|||||| ||| | || ||||| || | | ||| ||||| | || || |||||||||||
Sbjct 10683437 CATTTATAAAGAACCTCCACGAAGACGGAGAACCAAATGAAGAGTTGACTCTTTTTGAAT 10683378
Query 114203 GTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTG 114262
||||||||| | || | ||| |||||||| || || || | || | | ||
Sbjct 10683377 GTTGTAATCAGAAAGTGTTCTTCCATCCTCAAGTTGCTTTCCGGCAAAAATTAATCTTTG 10683318
Query 114263 TTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTC 114322
||| || ||||| || ||||| || || ||||||| ||| | | |||| |||||
Sbjct 10683317 TTGATCTGGAGGGATTCCTTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTC 10683258
Query 114323 GGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
| | ||| || || | || | ||||| || || | || || ||||||||||||||
Sbjct 10683257 AGATGGTTCAACTTCAAGAGTAATGGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420133708747620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |