Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 >seq2 Length=16759152 Score = 113 bits (124), Expect = 4e-20 Identities = 168/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| ||||| | || ||||| ||||| || || || || Sbjct 10681831 ATACCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCA 10681772 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||||||||||||||| ||||| | || | | |||||| || ||| Sbjct 10681771 GAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGA 10681712 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||||||| || | | |||| ||||||| | || Sbjct 10681711 GGAATTCCTTCTTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCT 10681652 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAA 114389 || || | || | |||||||| |||| ||| || || ||||| ||||||| |||| Sbjct 10681651 ACCTCAAGAGTGATAGTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCATGG-TTAA 10681596 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| ||||| | || ||||| ||||| || || || || Sbjct 10682743 ATACCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCA 10682684 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||||||||||||||| ||||| | || | | ||||| || ||| Sbjct 10682683 GAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGA 10682624 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||||||| ||| | | || | |||||||| | ||| Sbjct 10682623 GGAATTCCTTCTTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCT 10682564 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || |||| ||| || || ||||||||||| Sbjct 10682563 ACCTCGAGAGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | |||||| || | || || |||||||| || |||||||| Sbjct 10682971 ATACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCA 10682912 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||||||||||||||| ||||| | || | | |||||||| ||| Sbjct 10682911 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGA 10682852 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || |||||| ||| | | |||| |||||| | | ||| Sbjct 10682851 GGAATTCCTTCCTTATCTTGGATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCA 10682792 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || | || || |||||||||||||| Sbjct 10682791 ACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | |||||| || | || || |||||||||||||||||||| Sbjct 10682059 ATACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCA 10682000 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||||||||||||||| ||||| | || | | |||||||| ||| Sbjct 10681999 GAAAGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGA 10681940 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||| ||| ||| | | || | ||||| | | ||| Sbjct 10681939 GGGATTCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCA 10681880 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || | || || |||||||||||||| Sbjct 10681879 ACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| ||||| | |||||||||||||| || ||||| || Sbjct 10682287 ATACCTCCACGAAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCA 10682228 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||||||||||||||| || || |||| | | ||||| || || Sbjct 10682227 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGT 10682168 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || ||| ||| ||| | | |||| |||||||| | ||| Sbjct 10682167 GGAATTCCTTCCTTATCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCT 10682108 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || | ||| || |||||||| ||||| Sbjct 10682107 ACTTCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| ||||| | || ||||| ||||| || || || || Sbjct 10683199 ATACCTCCACGAAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCA 10683140 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||||||||||||||| || || |||| | | ||||| || ||| Sbjct 10683139 GAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGA 10683080 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||||| ||| | | || | |||||||| | ||| Sbjct 10683079 GGAATTCCTTCCTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCT 10683020 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || | ||| || |||||||| ||||| Sbjct 10683019 ACTTCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | |||||| || | || || || ||||| || ||||| || Sbjct 10682515 ATACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCA 10682456 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||||||||||||||| || || |||| | | ||||| || ||| Sbjct 10682455 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGA 10682396 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || ||||||| || | | |||| ||||| | | ||| Sbjct 10682395 GGAATTCCTTCCTTATCTTGAATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCA 10682336 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || | || || |||||||||||||| Sbjct 10682335 ACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682286 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/240 (69%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 114144 CATTTACAAATA-CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAAT 114202 |||||| ||| | || ||||| || | | ||| ||||| | || || ||||||||||| Sbjct 10683437 CATTTATAAAGAACCTCCACGAAGACGGAGAACCAAATGAAGAGTTGACTCTTTTTGAAT 10683378 Query 114203 GTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTG 114262 ||||||||| | || | ||| |||||||| || || || | || | | || Sbjct 10683377 GTTGTAATCAGAAAGTGTTCTTCCATCCTCAAGTTGCTTTCCGGCAAAAATTAATCTTTG 10683318 Query 114263 TTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTC 114322 ||| || ||||| || ||||| || || ||||||| ||| | | |||| ||||| Sbjct 10683317 TTGATCTGGAGGGATTCCTTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTC 10683258 Query 114323 GGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | | ||| || || | || | ||||| || || | || || |||||||||||||| Sbjct 10683257 AGATGGTTCAACTTCAAGAGTAATGGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133708747620