Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 >seq2 Length=16759152 Score = 107 bits (118), Expect = 2e-18 Identities = 276/415 (67%), Gaps = 4/415 (1%) Strand=Plus/Plus Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230 |||| || || || ||||||| || || |||||||| | ||||||| ||| || || Sbjct 13735822 AGTGCATCAATGTGATTTTTGTATATATGAGCATCTCCAATAGTGTGAACAAATTCACCT 13735881 Query 20231 GGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTA 20290 | | ||| ||| | |||| ||||| |||||| || || || ||||||||| Sbjct 13735882 GTAGCTATTCCACAAACTTTTGCAATCATATGAGTTAAAAGAGAGTATGAAGCAATGTTA 13735941 Query 20291 AAAGGAACTCCCAAACCCATGTCTCC-CGACCTCTGATACAGCTGACAGGAAAGCTCACC 20349 || ||||| || | ||| | || || | || | ||||||| || || | || || Sbjct 13735942 AATGGAACACCAAGACCAACATCCCCACTACGT-TGATACAAATGGCAACTTAATTCTCC 13736000 Query 20350 GTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAG-T 20408 || |||||||||||| ||| ||||| || || | |||| |||| | Sbjct 13736001 ATCTTGAACATAAAATTGAGCTAAAGTATGACATGGAGGCAAAACCATTTTAT-CAAGAT 13736059 Query 20409 CCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAAT 20468 | | || ||||| ||| | | ||| |||||||| ||||| | |||||| || Sbjct 13736060 CAGATGGATTCCATGCAGATAAAATAATTCTTCTTGAAAAAGGATTGGTCTTTATTTGAT 13736119 Query 20469 CCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGT 20528 | | | | | |||||| |||| || | ||| |||| || || || || | || Sbjct 13736120 CAATTACTTGGGCCAATTGATCAATTCCTTCACCTCTATAATCGGCGTCAACGCCTTTGT 13736179 Query 20529 ACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTC 20583 | | || ||||| || ||||| || ||||| ||||||||||||||||| || || Sbjct 13736180 ATGTAGCTCCAAAATGTCTCCATTGAAAACCATAAACAGGTCCCAAATCGCCTTC 13736234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441372055183400