Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 143 6e-29 >seq2 Length=16759152 Score = 143 bits (158), Expect = 6e-29 Identities = 263/382 (69%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 || || ||| | ||||| | ||||||||||| ||||||||||| || | |||| || Sbjct 11787803 CAGGCTTCTACCTCAGAACTTTATGGAAAAGTTCAAGAAATTCCACAAAAAGAAACAACA 11787744 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 72536 || ||||||||| |||| ||||| | || ||||| || || || | |||||| |||| Sbjct 11787743 CCATTTTATCCTAGAAGTCCTTATGCAGTAGCAAAATTATATGCATTTTGGATAATTAAA 11787684 Query 72537 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 72596 ||||| ||||| | ||| || | || || || || | || ||||| || Sbjct 11787683 AATTATCGTGAAGCATATGGAATTTTTGCTTGTAATGGAATATTATTTAATCATGAATCA 11787624 Query 72597 CCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTC 72656 || | ||||| || | || || || | ||||| || | | || || || ||| Sbjct 11787623 CCAAGAAGAGGTAATAATTTTGTAACAAGAAAAATTACAAGAGCTGTAGCTAAAATTAAT 11787564 Query 72657 AATGGTGTCGAAAAATGCATGTATCTC--GGTAATATAGATGCCAAAAGAGATTGGGGAT 72714 | ||||| || || ||| |||||| |||||| | ||||| ||| | |||||||| Sbjct 11787563 ATAGGTGTTCAAGAA-ACAT-TATCTCTTGGTAATTTGGATGCTAAACGTGATTGGGGCC 11787506 Query 72715 ATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACT 72774 |||| || || || ||||| ||||||||| || || ||||| ||| | ||||| | Sbjct 11787505 ATGCAAAAGAGTATGTAGAGGCAATGTGGAGAATCCTCCAACATGATGTAGCAGATGATT 11787446 Query 72775 ATGTGATTGCAACAGGGAAAAC 72796 ||| || | ||||| ||||| Sbjct 11787445 TTGTTATATCTACAGGAAAAAC 11787424 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || | ||||| || ||||||||||||||| ||||| | | Sbjct 10682284 CCTCCACGAAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAG 10682225 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| ||||| | ||||||||| || ||||||| | |||||| ||| Sbjct 10682224 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGA 10682165 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||| || ||||| | ||| || || || || | ||| | ||||||| Sbjct 10682164 ATTCCTTCCTTATCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACT 10682105 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || || | ||||||||| || || ||||| Sbjct 10682104 TCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||||||||||||||| | || || | ||| ||||| | ||||||||| || || Sbjct 10682705 TTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAA 10682646 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || | | |||||| ||||| ||||||||||| || || || || | ||| || Sbjct 10682645 AATTAATCTTTGTTGA---TCTGGAGGAATTCCTTCTTTGTCTTGAATCTTTGATTTAAC 10682589 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | ||| | |||||| ||||| ||||| ||||| || |||| |||||| Sbjct 10682588 ATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATGGTCTTTCCAGTCAAAGTCTT 10682529 Query 288459 GACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 10682528 AACGAAAATCTGCAT 10682514 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || | ||||| || ||| ||||||||||||||||| | Sbjct 10683196 CCTCCACGAAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10683137 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || | ||| ||||| | ||||||||| || ||||||| | ||||| |||| Sbjct 10683136 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTG---ATCTGGA 10683080 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || || || || || | ||| || || || || | ||| | |||| Sbjct 10683079 GGAATTCCTTCCTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCT 10683020 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || ||||| || || | ||||||||| || || ||||| Sbjct 10683019 ACTTCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||||||||||||||| | || || | ||| ||||| | ||||||||| || || Sbjct 10681793 TTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAA 10681734 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || | | ||||||| ||||| ||||||||||| || || || || | || || Sbjct 10681733 AATTAATCTCTGTTGA---TCTGGAGGAATTCCTTCTTTGTCTTGAATCTTTGACTTGAC 10681677 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || |||| ||| | ||||| || || ||||| || || || |||| |||||| Sbjct 10681676 ATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTTGCCTGTCAAAGTCTT 10681617 Query 288459 GACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 10681616 AACGAAAATTTGCAT 10681602 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||||||||| ||||| | ||| || | ||| ||||| | ||||||||| || ||| Sbjct 10682476 TCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAG 10682417 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || | | ||||| |||| || |||||||| ||||| || || || | || ||| Sbjct 10682416 ATTAATCTTTGTTG---ATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGACTTAACG 10682360 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| || | ||| ||||| || || || || || || || | ||||| Sbjct 10682359 TTGTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTA 10682300 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 10682299 ACAAAAATCTGCAT 10682286 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || || || || | || || | ||| ||||| | ||||||||| || || Sbjct 10682020 TCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAA 10681961 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || | | ||||| ||||| ||||||||| ||||| || ||||| | ||| ||| Sbjct 10681960 ATTAATCTTTGTTGG---TCTGGAGGGATTCCTTCCTTATCTTGAATTTTTGATTTGACG 10681904 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| || | ||| ||||| || || || || || || || | ||||| Sbjct 10681903 TTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTA 10681844 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 10681843 ACAAAAATCTGCAT 10681830 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||||||||| || || | ||| || | ||| ||||| | ||||||||| || || Sbjct 10682932 TCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAA 10682873 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || | | ||||| ||| || |||||||| ||||| ||||| || | ||| || Sbjct 10682872 ATTAATCTTTGTTG---GTCTGGAGGAATTCCTTCCTTATCTTGGATCTTTGATTTGACA 10682816 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | ||| ||||| || || || || || || || | ||||| Sbjct 10682815 TTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTA 10682756 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 10682755 ACAAAAATCTGCAT 10682742 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/162 (72%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || || ||||| ||||| ||||||||||||||| || || ||||| ||| Sbjct 15965447 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCT 15965388 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || ||||| || | || | || || || || ||||| ||||| || || ||| Sbjct 15965387 TTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAAGA 15965328 Query 288454 GTCTTGACGAATATCTGCATTATGTTATTCTAATATTTTTAA 288495 ||||| ||||| |||||||| || ||||| ||||| || Sbjct 15965327 GTCTTAACGAAAATCTGCAT----TTCGTCTAAAATTTTGAA 15965290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652359566530