Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq2 143 6e-29
>seq2
Length=16759152
Score = 143 bits (158), Expect = 6e-29
Identities = 263/382 (69%), Gaps = 4/382 (1%)
Strand=Plus/Minus
Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465
|| || ||| | ||||| | ||||||||||| ||||||||||| || | |||| ||
Sbjct 11787803 CAGGCTTCTACCTCAGAACTTTATGGAAAAGTTCAAGAAATTCCACAAAAAGAAACAACA 11787744
Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 68525
|| ||||||||| |||| ||||| | || ||||| || || || | |||||| ||||
Sbjct 11787743 CCATTTTATCCTAGAAGTCCTTATGCAGTAGCAAAATTATATGCATTTTGGATAATTAAA 11787684
Query 68526 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 68585
||||| ||||| | ||| || | || || || || | || ||||| ||
Sbjct 11787683 AATTATCGTGAAGCATATGGAATTTTTGCTTGTAATGGAATATTATTTAATCATGAATCA 11787624
Query 68586 CCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTC 68645
|| | ||||| || | || || || | ||||| || | | || || || |||
Sbjct 11787623 CCAAGAAGAGGTAATAATTTTGTAACAAGAAAAATTACAAGAGCTGTAGCTAAAATTAAT 11787564
Query 68646 AATGGTGTCGAAAAATGCATGTATCTC--GGTAATATAGATGCCAAAAGAGATTGGGGAT 68703
| ||||| || || ||| |||||| |||||| | ||||| ||| | ||||||||
Sbjct 11787563 ATAGGTGTTCAAGAA-ACAT-TATCTCTTGGTAATTTGGATGCTAAACGTGATTGGGGCC 11787506
Query 68704 ATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACT 68763
|||| || || || ||||| ||||||||| || || ||||| ||| | ||||| |
Sbjct 11787505 ATGCAAAAGAGTATGTAGAGGCAATGTGGAGAATCCTCCAACATGATGTAGCAGATGATT 11787446
Query 68764 ATGTGATTGCAACAGGGAAAAC 68785
||| || | ||||| |||||
Sbjct 11787445 TTGTTATATCTACAGGAAAAAC 11787424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102878092362250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |