Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2 143 6e-29 >seq2 Length=16759152 Score = 143 bits (158), Expect = 6e-29 Identities = 263/382 (69%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 || || ||| | ||||| | ||||||||||| ||||||||||| || | |||| || Sbjct 11787803 CAGGCTTCTACCTCAGAACTTTATGGAAAAGTTCAAGAAATTCCACAAAAAGAAACAACA 11787744 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 68525 || ||||||||| |||| ||||| | || ||||| || || || | |||||| |||| Sbjct 11787743 CCATTTTATCCTAGAAGTCCTTATGCAGTAGCAAAATTATATGCATTTTGGATAATTAAA 11787684 Query 68526 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 68585 ||||| ||||| | ||| || | || || || || | || ||||| || Sbjct 11787683 AATTATCGTGAAGCATATGGAATTTTTGCTTGTAATGGAATATTATTTAATCATGAATCA 11787624 Query 68586 CCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTC 68645 || | ||||| || | || || || | ||||| || | | || || || ||| Sbjct 11787623 CCAAGAAGAGGTAATAATTTTGTAACAAGAAAAATTACAAGAGCTGTAGCTAAAATTAAT 11787564 Query 68646 AATGGTGTCGAAAAATGCATGTATCTC--GGTAATATAGATGCCAAAAGAGATTGGGGAT 68703 | ||||| || || ||| |||||| |||||| | ||||| ||| | |||||||| Sbjct 11787563 ATAGGTGTTCAAGAA-ACAT-TATCTCTTGGTAATTTGGATGCTAAACGTGATTGGGGCC 11787506 Query 68704 ATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACT 68763 |||| || || || ||||| ||||||||| || || ||||| ||| | ||||| | Sbjct 11787505 ATGCAAAAGAGTATGTAGAGGCAATGTGGAGAATCCTCCAACATGATGTAGCAGATGATT 11787446 Query 68764 ATGTGATTGCAACAGGGAAAAC 68785 ||| || | ||||| ||||| Sbjct 11787445 TTGTTATATCTACAGGAAAAAC 11787424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102878092362250