Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq2 102 8e-17
>seq2
Length=16759152
Score = 102 bits (112), Expect = 8e-17
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | ||| ||||| | |||| |||||||| || || |||||
Sbjct 10682740 CCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10682681
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| | || || |||||||| || | | | |||| | ||||| || |||||
Sbjct 10682680 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGA 10682621
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||||||||| ||| | |||| ||||| |||| | | |||||||| | || |
Sbjct 10682620 ATTCCTTCTTTGTCT-TGAATCTTTGATTTAACATTGT-CGATGGTGTCGGATGGTTCTA 10682563
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||| || | || || ||||||| ||| || || |||||||||||
Sbjct 10682562 CCTCGAGAGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514
Score = 95.1 bits (104), Expect = 1e-14
Identities = 116/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 138473 TACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTT 138532
|||||| | | || ||||| |||||||| || || || ||||||||||| ||| ||||
Sbjct 15965449 TACCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCT-TGAATTTTG 15965391
Query 138533 G-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTC 138591
| ||||| | ||| | |||||| | | ||| ||||| | || | || ||||||||
Sbjct 15965390 GCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTA 15965331
Query 138592 AGAGTTTTTACAAAAATCTGCATGGCTTATAATATT 138627
||||| || || ||||||||||| | | ||| |||
Sbjct 15965330 AGAGTCTTAACGAAAATCTGCATTTCGTCTAAAATT 15965295
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | ||| ||||| | |||| |||||||| || || |||||
Sbjct 10681828 CCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10681769
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| | || || |||||||| || | | | |||| | |||||| || |||||
Sbjct 10681768 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGA 10681709
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||||||||| ||| | |||| || |||| || | ||||||| | ||| |
Sbjct 10681708 ATTCCTTCTTTGTC-TTGAATCTTTGACTTGACATTG-TCAATAGTGTCGGAAGGCTCTA 10681651
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616
|||| | || | ||||| || |||| ||| || || ||||| |||||||
Sbjct 10681650 CCTCAAGAGTGATAGTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCATGG 10681600
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | |||||| || | ||||||| |||||||||||||| ||
Sbjct 10682056 CCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAA 10681997
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| | || || |||||||| || | | | |||| | |||||||| |||||
Sbjct 10681996 AGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGG 10681937
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| || || ||| |||||| ||| | |||| | | ||||| | | || |
Sbjct 10681936 ATTCCTTCCTTATCT-TGAATTTTTGATTTGACGTTGT-CGATAGTGTCAGATGGTTCAA 10681879
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
| || | || | |||||||| || | || || ||||||||||||||
Sbjct 10681878 CTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | |||||| || | ||||||||||||| || ||||||||
Sbjct 10682512 CCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAG 10682453
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| | || || |||||||| |||| | |||||| | ||||| || |||||
Sbjct 10682452 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGA 10682393
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| || || ||| | |||| |||| ||| || | ||||| | | || |
Sbjct 10682392 ATTCCTTCCTTATC-TTGAATCTTTGACTTAACGTTG-TCAATAGTGTCAGATGGTTCAA 10682335
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
| || | || | |||||||| || | || || ||||||||||||||
Sbjct 10682334 CTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261562557200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |