Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2 129 4e-25 >seq2 Length=16759152 Score = 129 bits (142), Expect = 4e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| |||||||| ||||| |||||||| || ||||| || |||| |||| | ||||| Sbjct 10682267 AACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTC 10682208 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| || || | ||||| | ||||| || ||||||||||||||| || Sbjct 10682207 AAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCTTG 10682148 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| ||| ||| | || || || ||| |||||| || | ||||| || || Sbjct 10682147 AATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTT 10682088 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| | ||| || ||||||||||||||| Sbjct 10682087 TCCTGTTAAAGTCTTGACAAAAATTTGCATA 10682057 Score = 114 bits (126), Expect = 9e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 |||||| ||||| || || |||||||| || |||||||| |||| |||| | ||||| Sbjct 10682951 AACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTC 10682892 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| ||||| | || || | |||||||| |||||||||||||| || Sbjct 10682891 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTG 10682832 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || ||| ||| | || || || || | ||| || || | ||||| ||||| Sbjct 10682831 GATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGTTTT 10682772 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||||| | || || |||||||| |||||| Sbjct 10682771 ACCTGTTAAGGTCTTAACAAAAATCTGCATA 10682741 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 |||||| ||||| || || |||||||| ||||||||||| ||| | || | ||||| Sbjct 10682039 AACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTC 10681980 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| ||||| | || || | |||||||| || ||||||||||| || Sbjct 10681979 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTG 10681920 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| ||| || | || ||||| || ||| || || | ||||| ||||| Sbjct 10681919 AATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTT 10681860 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||||| | || || |||||||| |||||| Sbjct 10681859 ACCTGTTAAGGTCTTAACAAAAATCTGCATA 10681829 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| |||||||| || || || ||||| || || || || ||| |||| | ||||| Sbjct 10683179 AACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTC 10683120 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| || || | ||||| | ||||| || ||||||||||||||||| Sbjct 10683119 AAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTG 10683060 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || ||| ||| | || || || ||| |||||| || | ||||| || || Sbjct 10683059 AATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTT 10683000 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| | ||| || ||||||||||||||| Sbjct 10682999 TCCTGTTAAAGTCTTGACAAAAATTTGCATA 10682969 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| || || || || ||||| || || || || ||| |||| | ||||| Sbjct 10681811 AACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTC 10681752 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| ||||| | || || | |||||| || ||||||||||| ||||| Sbjct 10681751 AAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTG 10681692 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || ||| | || ||||| ||| | ||||| || | || || ||||| Sbjct 10681691 AATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTT 10681632 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| ||| || || ||||||||||| Sbjct 10681631 GCCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| |||||||| || || |||||||| ||||||||||| || |||| | || || Sbjct 10683407 AACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCATCCTC 10683348 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || || | || || | ||||| || || ||||||||||| || Sbjct 10683347 AAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTATCTTG 10683288 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || ||| ||| | || ||||| || ||| || || | ||||||||||| Sbjct 10683287 AATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTTT 10683228 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||||| | || || |||||||| |||||| Sbjct 10683227 ACCTGTTAAGGTCTTAACAAAAATCTGCATA 10683197 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 |||||| ||||| || || || ||||| || ||||| || |||| |||| | ||||| Sbjct 10682495 AACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTC 10682436 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| || || | || || | ||||| || |||||||||||||| || Sbjct 10682435 AAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTG 10682376 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || || | || ||||| || ||| || || | ||||| ||||| Sbjct 10682375 AATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTT 10682316 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||||| | || || |||||||| |||||| Sbjct 10682315 ACCTGTTAAGGTCTTAACAAAAATCTGCATA 10682285 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| || || || || ||||| || || || || ||| |||| | ||||| Sbjct 10682723 AACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTC 10682664 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| ||||| | || || | ||||| || ||||||||||| ||||| Sbjct 10682663 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTG 10682604 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || ||| ||| | || || || ||| |||||| || | || ||||| || Sbjct 10682603 AATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATGGTCTT 10682544 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||| || || ||||| |||||| Sbjct 10682543 TCCAGTCAAAGTCTTAACGAAAATCTGCATA 10682513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391411978475