Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq2 82.4 7e-11
>seq2
Length=16759152
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/212 (69%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
|||||||| | || || || ||||| ||||| || || | || | ||| ||
Sbjct 10681810 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10681751
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
|| ||||||||||| | || |||| ||| ||||| ||||| || || || |||| | ||
Sbjct 10681750 AGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGT-CTTG 10681692
Query 127025 ATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083
| | | || ||||| | || | ||||| | | ||| || || | || | |||||
Sbjct 10681691 AATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTT 10681632
Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115
||| |||| ||| || || ||||| |||||||
Sbjct 10681631 GCCTGTCAAAGTCTTAACGAAAATTTGCATGG 10681600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475499997592400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |