Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 123 6e-23
>seq2
Length=16759152
Score = 123 bits (136), Expect = 6e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | ||| ||||| ||||||||||||| |||||||||| | |||
Sbjct 10682506 CGAAGACGAAGAACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTT 10682447
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
||||||||||| || || |||||||| ||||| | | || || || ||| |||||||
Sbjct 10682446 CTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCT 10682387
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || ||||||||| ||| ||| || | ||||| | || ||| || || |
Sbjct 10682386 TCCTTATCTTGAATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAACTTCAAGA 10682327
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || ||||| || | || || |||||||| ||
Sbjct 10682326 GTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTG 10682289
Score = 123 bits (136), Expect = 6e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | || ||||| || |||||||||| || ||||||| | |||
Sbjct 10683190 CGAAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTT 10683131
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
||||||||||| || || |||||||| ||||| | | || || || ||| |||||||
Sbjct 10683130 CTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCT 10683071
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || ||||||||| || || |||| |||||| | || |||||| || |
Sbjct 10683070 TCCTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGA 10683011
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || | ||| || |||||||||||
Sbjct 10683010 GTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTG 10682973
Score = 118 bits (130), Expect = 2e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | |||||||| || |||||||||| || ||||||| | |||
Sbjct 10682734 CGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTT 10682675
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
||||||||||| || || ||||| || || || | | || || || ||| |||||||
Sbjct 10682674 CTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCT 10682615
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| || ||||||||| || || |||| |||||| | || |||||| || |
Sbjct 10682614 TCTTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGA 10682555
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || | ||| || || ||||| ||
Sbjct 10682554 GTGATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTG 10682517
Score = 109 bits (120), Expect = 1e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | |||||||| || |||||||||| || ||||||| | |||
Sbjct 10681822 CGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTT 10681763
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
||||||||||| || || ||||| || || || | | ||| || || ||| |||||||
Sbjct 10681762 CTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCT 10681703
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| || ||||||||| ||| || || | ||||| | | ||||| || |
Sbjct 10681702 TCTTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGA 10681643
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || || | ||| || || ||||||||
Sbjct 10681642 GTGATAGTTTTGCCTGTCAAAGTCTTAACGAAAATTTG 10681605
Score = 109 bits (120), Expect = 1e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | || ||||| || || ||||||| |||||||||| | |||
Sbjct 10682278 CGAAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTT 10682219
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
||||||||||| || || |||||||| ||||| | | || || || || |||||||
Sbjct 10682218 CTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCT 10682159
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || ||||| ||| || || || | |||||| | || |||||| || |
Sbjct 10682158 TCCTTATCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGA 10682099
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || | ||| || |||||||||||
Sbjct 10682098 GTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTG 10682061
Score = 105 bits (116), Expect = 2e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | ||| ||||| ||||| ||||| | |||||| |||| | ||||
Sbjct 10682050 CGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTC 10681991
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
||||||||||| || || ||||| || || || | | || ||||| ||| ||||||
Sbjct 10681990 CTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCT 10681931
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || ||||| ||| || ||| |||| ||||| | || ||| || || |
Sbjct 10681930 TCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGA 10681871
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || ||||| || | || || |||||||| ||
Sbjct 10681870 GTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTG 10681833
Score = 96.9 bits (106), Expect = 8e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | ||| ||||| ||||| ||||||| ||||| |||| | |||
Sbjct 10682962 CGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTT 10682903
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
||||||||||| || || ||||| || || || | | || ||||| ||| |||||||
Sbjct 10682902 CTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCT 10682843
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || || |||||| || || || | |||||| | | ||| || || |
Sbjct 10682842 TCCTTATCTTGGATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGA 10682783
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || ||||| || | || || |||||||| ||
Sbjct 10682782 GTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTG 10682745
Score = 87.8 bits (96), Expect = 4e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | || ||||| ||||| ||||| | |||||| |||| | ||
Sbjct 10683418 CGAAGACGGAGAACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTT 10683359
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
|||||||| || || ||||||||||| || || | | || || || ||| ||||||
Sbjct 10683358 CTTCCATCCTCAAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCT 10683299
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || ||||||||| || || || | ||||| | || ||| || || |
Sbjct 10683298 TCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGA 10683239
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || ||||| || | || || |||||||| ||
Sbjct 10683238 GTAATGGTTTTACCTGTTAAGGTCTTAACAAAAATCTG 10683201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178919560834045
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |