Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq1 105 5e-18
seq2 87.8 1e-12
>seq1
Length=11693564
Score = 105 bits (116), Expect = 5e-18
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 42514 GTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGAAA 42573
||||||||||||||||| ||| || ||||||| ||||| || || ||||| ||
Sbjct 10469966 GTTACCTAAATCACCAACATGACGAATTTCATCACCAGGTCCTCCATGAGTTTTATTGAA 10470025
Query 42574 AGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATGTAT 42633
||||||||| ||| ||||| || ||||||| || || | ||| ||| ||| ||| ||
Sbjct 10470026 AGGATTAAAGTGTGGTCCAGCAGAAATACATCCGTTAGTTGAATCACCATATTGATGGAT 10470085
Query 42634 ATGAAAACCGTGATAACC 42651
|||||||||||| ||||
Sbjct 10470086 ATGAAAACCGTGTAAACC 10470103
>seq2
Length=16759152
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || |||||||| | ||| ||| ||||| |||||||| || |
Sbjct 10682740 CCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10682681
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| | | | |||| || | |||||| || |||||||||| | || ||||| | ||
Sbjct 10682680 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGA 10682621
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| ||||||||||| || ||| |||| || |||| | ||||| | ||| |
Sbjct 10682620 ATTCCTTCTTTGTCTTGAATCTTTGATTTAACATTGTCG--ATGGTGTCGGATGGTTCTA 10682563
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || | ||| || || || || || ||||| || ||||| ||||||||
Sbjct 10682562 CCTCGAGAGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347369028468455
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |