Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1 105 5e-18 seq2 87.8 1e-12 >seq1 Length=11693564 Score = 105 bits (116), Expect = 5e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 42514 GTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGAAA 42573 ||||||||||||||||| ||| || ||||||| ||||| || || ||||| || Sbjct 10469966 GTTACCTAAATCACCAACATGACGAATTTCATCACCAGGTCCTCCATGAGTTTTATTGAA 10470025 Query 42574 AGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATGTAT 42633 ||||||||| ||| ||||| || ||||||| || || | ||| ||| ||| ||| || Sbjct 10470026 AGGATTAAAGTGTGGTCCAGCAGAAATACATCCGTTAGTTGAATCACCATATTGATGGAT 10470085 Query 42634 ATGAAAACCGTGATAACC 42651 |||||||||||| |||| Sbjct 10470086 ATGAAAACCGTGTAAACC 10470103 >seq2 Length=16759152 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | ||| ||| ||||| |||||||| || | Sbjct 10682740 CCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10682681 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| || | |||||| || |||||||||| | || ||||| | || Sbjct 10682680 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGA 10682621 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||||||||| || ||| |||| || |||| | ||||| | ||| | Sbjct 10682620 ATTCCTTCTTTGTCTTGAATCTTTGATTTAACATTGTCG--ATGGTGTCGGATGGTTCTA 10682563 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| || || || || || ||||| || ||||| |||||||| Sbjct 10682562 CCTCGAGAGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347369028468455