Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 125 7e-24 >seq2 Length=16759152 Score = 125 bits (138), Expect = 7e-24 Identities = 343/519 (66%), Gaps = 10/519 (2%) Strand=Plus/Minus Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 ||||| | ||| || || || | || || ||||| || || ||||| | ||| ||| | Sbjct 14764457 AACATAAGGCAGGCGAAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTG--G 14764400 Query 132946 AAAGT--CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 || || ||| || ||||| | || ||||| || ||||||||||||| || || | Sbjct 14764399 AATGTGTCAATCCTGGCATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAAC 14764340 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC-T 133062 | |||||||||| || || || || || ||||| | | || || || || || || | Sbjct 14764339 CAGAAAAGAAGATACCTTCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCAT 14764280 Query 133063 TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122 |||| | |||||||| | | ||||| || || |||| | ||| | || | | Sbjct 14764279 TCTTATC-AGCGATCCATCTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCA 14764221 Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGG 133182 || | || || || | | | | || || | ||| | ||||| ||||| || Sbjct 14764220 TCTAAAGCATTAAAAAGTTTCATTCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGT 14764161 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 | |||||||| || ||| | || |||||||| ||||| || || || ||| | || Sbjct 14764160 TTTGAATACATCTCACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGT 14764101 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 |||||| | || ||||||| || || | |||||||| ||| || || || || || Sbjct 14764100 GCCTCGGGAATTTGAACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCA 14764041 Query 133303 TCGCTGGCGGCGAAAAAGGCCA--GCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA 133360 || ||||| || || || | |||||| || ||| ||||| ||||| ||| Sbjct 14764040 TCAGAAGCGGCAAAGAAAGCTAAGACACGTG--AAATAAAAAAACGCTCATTGTCTGTCA 14763983 Query 133361 AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCT 133399 |||||||| | | | || || |||||| |||| Sbjct 14763982 TTGATTCCCAGTCTCTCATATCTTTTCCCAGGTCAACCT 14763944 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || |||||||| ||||| | || || ||| | || Sbjct 10681602 ATGCAAATTTTCGTTAAGACTTTGACAGGCAAAACTATCACTCTTGAGGTAGAGCCTTCC 10681661 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || ||| || | |||||||| |||||||| | || ||| Sbjct 10681662 GACACTATTGACAATGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10681721 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | |||| || || ||||| || || || | | || || ||||| || Sbjct 10681722 CAGAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10681781 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || |||||||| || ||| Sbjct 10681782 ATCCAAAAGGAATCAACTCTCCATTTGGTTCTTCGT 10681817 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || |||||||| |||| || || | || Sbjct 10682514 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCC 10682573 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | ||||| ||| || | |||||||| |||||||| | || ||| Sbjct 10682574 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10682633 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | |||| || || ||||| || || || | | || || ||||| || Sbjct 10682634 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10682693 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || |||||||| || ||| Sbjct 10682694 ATCCAAAAGGAATCAACTCTCCATTTGGTTCTTCGT 10682729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171955958400