Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq1 145 9e-30
seq2 123 3e-23
>seq1
Length=11693564
Score = 145 bits (160), Expect = 9e-30
Identities = 898/1416 (63%), Gaps = 59/1416 (4%)
Strand=Plus/Minus
Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665
|||| ||||| | | || ||||| || || | || || |||||||| |||||| ||
Sbjct 6014921 GAAAGACCACAACATTTATTAATGCGTGTGGCAGTTGGAATTCATGGGGATGATATTAAT 6014862
Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCC----GTGGTATGTTCATCCACGCAACACC 111721
|||||| | || ||||| ||| | ||||| | ||||| | |||| || | ||
Sbjct 6014861 TCTGTTATTGAAACATATGACTATATGTCTCAGAAGTGGTTTACTCAT----GCCTCTCC 6014806
Query 111722 AACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAA 111781
||| | || || || || || | | || || |||| |||||| || | ||
Sbjct 6014805 AACATTATTTAATGCAGGAACCAGACGTCCACAGCTGTCTTCGTGTTTC----TTACTAA 6014750
Query 111782 CAAGG----AGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCT 111837
||| | | |||||||| | || || || | ||||| | ||||||| ||| |
Sbjct 6014749 CAATGTCTGATGATTCAATTGAAGGTATATATGATACTCTTAAACAATGTGCATTAATTT 6014690
Query 111838 CAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA 111897
|||| | ||||| ||||| || || | | ||| | | | || || ||| ||
Sbjct 6014689 CAAAATCTGCTGGCGGTATTGGATTGAATGTTCATTGTATTCGTGCTAATGGTTCTTTTA 6014630
Query 111898 TTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 111957
|| | |||||||||||| ||| |||| | || |||||| | | || |||||| |
Sbjct 6014629 TTGGTGGTACAAATGGTACATCTAATGGATTAATACCAATGTTGAGAGTTTTTAACAATA 6014570
Query 111958 CAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAG----GGATCTATCGCAGTCTATCTT 112013
|||| |||||||| |||||| ||| ||| ||| | | || | |||||
Sbjct 6014569 CAGCACGCTATGTTGACCAAG-GGGGAAATAAAAGACCTGGAGCATTTGCTATATATCTA 6014511
Query 112014 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAG 112073
|| |||||||| || || || | || || | || | || ||| |||
Sbjct 6014510 GAACCATGGCATGCTGACATTTTAGAATTTTTGGATCTTAAGAAAAATACAGGCCCTGAA 6014451
Query 112074 GAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGA 112133
|| | | || ||| | || | | ||| |||||||| ||| | || ||||| |
Sbjct 6014450 GAAGAAAGAGCTCGTGATTTATTTTATGGTCTTTGGATTCCTGATTTATTTATGAAACGT 6014391
Query 112134 GTTGAG-GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA 112192
|| ||| ||| | |||||||| | | || || || | || || || ||
Sbjct 6014390 GTAGAGAAAGACT-CTTATTGGTCTTTGATGTGCCCCCACGAATGTCCTGGACTTGAGGA 6014332
Query 112193 TGCCGTGGGTGAGGAGTTTGAAGCCCTCTA-CACAAAGTACGAGGA--AGAAA-GT--CG 112246
| | |||||||| ||||| | | || ||| ||||| || | ||||| || |
Sbjct 6014331 TACTTGGGGTGAGGCTTTTGAGGAATTATATCAC-AAGTATGAAAATGAGAAACGTTACA 6014273
Query 112247 GGCGACTGCGACGGTGCCAGCTGCCGATGTGTGG--AAAGCTATTCTCAAGTCTCAAACC 112304
| || | | ||||| | | | ||| |||| | || | || |||||
Sbjct 6014272 GAAAACAAATAAAG-GCCAG----AGTTATTTGGCAAAAGAT-TTGTGAA-AGTCAAATT 6014220
Query 112305 GAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 112364
|| || || ||||| |||||| |||||||||| ||||| | || ||||||||| |
Sbjct 6014219 GAAACCGGAACACCTTATATGGTTTACAAAGATCATTGTAATCGTAAAAGTAATCAACAA 6014160
Query 112365 AATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAA 112424
||| | || || || |||| || | ||||| ||||| | |||| | | |
Sbjct 6014159 AATCTTGGAACCATTAAATGTTCAAATTTATGTACTGAAATTGTTGAATATTGTGCACCA 6014100
Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA---TCCA 112481
||||| ||||| ||||| || | ||| || ||||| | | ||| || | |
Sbjct 6014099 GATGAAGTTGCTGTATGTAATCTAGGATCTATTGCTCTTAATAGATTTGTTGAAGTTGTA 6014040
Query 112482 GA-GACAAA--GACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAA 112538
|| | ||| | ||| ||| || |||| || | ||| | |||| | | || |||
Sbjct 6014039 GATGGTAAACCTGCTTTTAATTTCAAACAACTTCATGTTGTTTCTAAAATTCTAACTAAA 6013980
Query 112539 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCT 112595
|| | || | | |||||||| |||| ||| || || ||| || | |||||
Sbjct 6013979 AATTTGAATAAAATTATTGATGTCAATTATTATCCTGTCCCTGA---AGCCAGAAAATCA 6013923
Query 112596 AATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTT 112655
|||||||||||||||||||||||| | ||||| || ||| | || |||| ||| || |||
Sbjct 6013922 AATATGAGACACCGTCCAATTGGTATTGGTGTTCAGGGTTTAGCTGATGCATTTATGCTT 6013863
Query 112656 TGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACA 112715
|| | | || ||| | || || ||| | ||| | || ||||| |||
Sbjct 6013862 ATGCGTTATCCTTTCACTTCACCTGCCGCTAAAGAACTTAATAAGTTGATTTTTGAAACA 6013803
Query 112716 ATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAA 112775
|| || || | || | || || | || | || || ||||||||| |||||
Sbjct 6013802 ATTTACCATGGAGCATTGGAAGCTTCATGTGAAGTAGCTGAACGTGATGGTCCTTATGAG 6013743
Query 112776 ACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAG 112835
|| | ||| || ||||||| ||| |||| | ||||||| ||| |||| |||| || |
Sbjct 6013742 ACATATGATGGATCTCCAGTATCAAAAGGTATTCTTCAATATGACATGT-GGAATGTCAA 6013684
Query 112836 ACCAA--GCTTCACTACGACTGGGACGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCT 112891
||||| | || | | || ||||| || | || | | ||| ||| | | ||| |
Sbjct 6013683 ACCAAGTGATTTA-TGGGATTGGGAAACTTTAAAAGCAGACATTGCAA--AACATGGTGT 6013627
Query 112892 TCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAA 112951
| || | | || | || ||||||||||| || || || ||||| || | || ||
Sbjct 6013626 AAGAAATTCTTTATTACTTGCTCCAATGCCAACTGCTTCAACTGCACAGATTCTAGGAAA 6013567
Query 112952 TAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987
|||||||| ||||||| || || | ||||| ||
Sbjct 6013566 TAATGAATCTATTGAACCATATACTTCTAACATTTA 6013531
>seq2
Length=16759152
Score = 123 bits (136), Expect = 3e-23
Identities = 453/702 (65%), Gaps = 12/702 (2%)
Strand=Plus/Plus
Query 112296 TCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 112355
||||| | || ||||||| ||||||||| |||| ||||| ||||| | || |||
Sbjct 8585420 TCTCAGATTGAAACTGGTATTCCATATATGGTTTATAAAGATCATTGTAATCGTAAAAGT 8585479
Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAAT-T 112414
|||||| | ||||| || ||| | |||| || || ||||| ||||| | ||| |
Sbjct 8585480 AATCAACAAAATTTAGGAACGATTAGATGTTCAAATCTATGTACTGAAATTATTCAATAT 8585539
Query 112415 TACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 112474
| | ||| || | |||| ||||| | |||||||| || || | || |||
Sbjct 8585540 TGTTCTCCAAGCGAAGTTG-CTGTTTGTAATTTAGCATCAATTGCACTTAATATGTTTGT 8585598
Query 112475 GGATCCAGA-GACAAAGA-----CATTTGATTATGAAAAACTCCACGAAGTTACGAAAAC 112528
| | | | || ||| | ||||||| | | ||| || || || || || ||||
Sbjct 8585599 TGTTATAAAAGAAAAAAAACCTACATTTGACTTTAAAATGCTTCATGATGTGACAAAAAT 8585658
Query 112529 TGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCG 112588
||| |||| ||| |||| | | ||||||||| |||||||| || | || |||||
Sbjct 8585659 TGTAACAAGAAATTTAAATAAAATTATTGATATTAATTTTTATCCACTAGAAGAAGCTCG 8585718
Query 112589 TAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATT 112648
| ||| ||| | | || ||||||||||| | ||||| ||||| || || ||| |||
Sbjct 8585719 TTTATCAAATCTTAAGCATCGTCCAATTGGAATTGGTGTTCAAGGACTTGCTGATACATT 8585778
Query 112649 CATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATT 112708
| ||| | | | || || ||||| || || | ||| || ||
Sbjct 8585779 TTTGCTTATGAGGTATCCTTTCACATCACCAGAAGCTAAAGATCTTAATATAAAAATTTT 8585838
Query 112709 TGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCC 112768
||| || || ||||| | || ||||| || | || ||| || || ||||
Sbjct 8585839 TGAAACTATTTATCATGGTGCACTTGAAGCTTCCTGTGAATTGTCAAAGAAGTATGGATG 8585898
Query 112769 ATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGA 112828
|||||||| || | | ||||||||| || |||| | ||||| | |||||||| |||
Sbjct 8585899 TTATGAAACATTCAAAGATTCTCCAGCATCCAAAGGAATTCTTCAGTATGATATGT-GGA 8585957
Query 112829 AGGTGAGACCAA--GCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAG 112886
| || | |||| | || | | || ||||| | | ||| || || |
Sbjct 8585958 ATGTTATTCCAAGTGATTTA-TGGGAATGGGATATTTTAAAGCAAGAAATTATACGTTTT 8586016
Query 112887 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 112946
|||||||| || | || || || |||||||| ||||| || || | ||||| |
Sbjct 8586017 GGTCTTCGCAATTCATTATTAATTGCTCCAATGCCTACAGCATCTACATCTCAAATTCTT 8586076
Query 112947 GGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 112988
|| || ||||||| ||||||| || || | || || |||
Sbjct 8586077 GGAAACAATGAATCTATTGAACCATATACTTCTAATATATAT 8586118
Score = 87.8 bits (96), Expect = 2e-12
Identities = 241/368 (65%), Gaps = 6/368 (2%)
Strand=Plus/Minus
Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947
||||| | || || | ||| || || ||| | ||||| | ||||| ||||| ||
Sbjct 9293313 TCAAATCTTCCAGGTCTAAGAAGTGCACTATCTAACATATCTGCACGATTTGTTGCAGCA 9293254
Query 15948 ATGACAACAATACCTGTTTCGT---TATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004
|| |||| || | | || | || |||||||||||| || | | || |||
Sbjct 9293253 ATAACAATAACAGAAGATTGTTCAGTACTAAAACCATCCATTTCAACAAGTAATTGATTA 9293194
Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC---AGCACTGCGTTGCTTTCCC 16061
| ||| | ||| |||| || | ||||| ||| | |||| | || ||||
Sbjct 9293193 AGAGTATTTTCTTGTTCTGAATGACCACCCATACTACCTTTACCACTTCTTTTTCTTCCA 9293134
Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 16121
|| ||||| || |||||||| || | ||| |||||| ||||| | ||| | ||||
Sbjct 9293133 ACAGCATCTATTTCATCAATAAACAAGATACATGGTGAATTTTTTCTAGCCATAGCAAAC 9293074
Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181
| ||| ||||| | | || |||||||||||||| || | ||| | || | ||
Sbjct 9293073 ATATCACGTACTCTAGCAGGACCAACACCAACAAACATTTCAAGAAACTCTGATCCAGAT 9293014
Query 16182 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241
| || || || ||||||| |||||| ||| ||||| || || | || |||||
Sbjct 9293013 ACTGTTATAAATGGTACATTAGCTTCACCAGCAGTGGCTTTAGCAAGTAATGTTTTACCT 9292954
Query 16242 GTACCTGG 16249
||||||||
Sbjct 9292953 GTACCTGG 9292946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620741352497200
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