Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 145 9e-30 seq2 123 3e-23 >seq1 Length=11693564 Score = 145 bits (160), Expect = 9e-30 Identities = 898/1416 (63%), Gaps = 59/1416 (4%) Strand=Plus/Minus Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 |||| ||||| | | || ||||| || || | || || |||||||| |||||| || Sbjct 6014921 GAAAGACCACAACATTTATTAATGCGTGTGGCAGTTGGAATTCATGGGGATGATATTAAT 6014862 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCC----GTGGTATGTTCATCCACGCAACACC 111721 |||||| | || ||||| ||| | ||||| | ||||| | |||| || | || Sbjct 6014861 TCTGTTATTGAAACATATGACTATATGTCTCAGAAGTGGTTTACTCAT----GCCTCTCC 6014806 Query 111722 AACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAA 111781 ||| | || || || || || | | || || |||| |||||| || | || Sbjct 6014805 AACATTATTTAATGCAGGAACCAGACGTCCACAGCTGTCTTCGTGTTTC----TTACTAA 6014750 Query 111782 CAAGG----AGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCT 111837 ||| | | |||||||| | || || || | ||||| | ||||||| ||| | Sbjct 6014749 CAATGTCTGATGATTCAATTGAAGGTATATATGATACTCTTAAACAATGTGCATTAATTT 6014690 Query 111838 CAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA 111897 |||| | ||||| ||||| || || | | ||| | | | || || ||| || Sbjct 6014689 CAAAATCTGCTGGCGGTATTGGATTGAATGTTCATTGTATTCGTGCTAATGGTTCTTTTA 6014630 Query 111898 TTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 111957 || | |||||||||||| ||| |||| | || |||||| | | || |||||| | Sbjct 6014629 TTGGTGGTACAAATGGTACATCTAATGGATTAATACCAATGTTGAGAGTTTTTAACAATA 6014570 Query 111958 CAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAG----GGATCTATCGCAGTCTATCTT 112013 |||| |||||||| |||||| ||| ||| ||| | | || | ||||| Sbjct 6014569 CAGCACGCTATGTTGACCAAG-GGGGAAATAAAAGACCTGGAGCATTTGCTATATATCTA 6014511 Query 112014 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAG 112073 || |||||||| || || || | || || | || | || ||| ||| Sbjct 6014510 GAACCATGGCATGCTGACATTTTAGAATTTTTGGATCTTAAGAAAAATACAGGCCCTGAA 6014451 Query 112074 GAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGA 112133 || | | || ||| | || | | ||| |||||||| ||| | || ||||| | Sbjct 6014450 GAAGAAAGAGCTCGTGATTTATTTTATGGTCTTTGGATTCCTGATTTATTTATGAAACGT 6014391 Query 112134 GTTGAG-GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA 112192 || ||| ||| | |||||||| | | || || || | || || || || Sbjct 6014390 GTAGAGAAAGACT-CTTATTGGTCTTTGATGTGCCCCCACGAATGTCCTGGACTTGAGGA 6014332 Query 112193 TGCCGTGGGTGAGGAGTTTGAAGCCCTCTA-CACAAAGTACGAGGA--AGAAA-GT--CG 112246 | | |||||||| ||||| | | || ||| ||||| || | ||||| || | Sbjct 6014331 TACTTGGGGTGAGGCTTTTGAGGAATTATATCAC-AAGTATGAAAATGAGAAACGTTACA 6014273 Query 112247 GGCGACTGCGACGGTGCCAGCTGCCGATGTGTGG--AAAGCTATTCTCAAGTCTCAAACC 112304 | || | | ||||| | | | ||| |||| | || | || ||||| Sbjct 6014272 GAAAACAAATAAAG-GCCAG----AGTTATTTGGCAAAAGAT-TTGTGAA-AGTCAAATT 6014220 Query 112305 GAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 112364 || || || ||||| |||||| |||||||||| ||||| | || ||||||||| | Sbjct 6014219 GAAACCGGAACACCTTATATGGTTTACAAAGATCATTGTAATCGTAAAAGTAATCAACAA 6014160 Query 112365 AATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAA 112424 ||| | || || || |||| || | ||||| ||||| | |||| | | | Sbjct 6014159 AATCTTGGAACCATTAAATGTTCAAATTTATGTACTGAAATTGTTGAATATTGTGCACCA 6014100 Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA---TCCA 112481 ||||| ||||| ||||| || | ||| || ||||| | | ||| || | | Sbjct 6014099 GATGAAGTTGCTGTATGTAATCTAGGATCTATTGCTCTTAATAGATTTGTTGAAGTTGTA 6014040 Query 112482 GA-GACAAA--GACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAA 112538 || | ||| | ||| ||| || |||| || | ||| | |||| | | || ||| Sbjct 6014039 GATGGTAAACCTGCTTTTAATTTCAAACAACTTCATGTTGTTTCTAAAATTCTAACTAAA 6013980 Query 112539 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCT 112595 || | || | | |||||||| |||| ||| || || ||| || | ||||| Sbjct 6013979 AATTTGAATAAAATTATTGATGTCAATTATTATCCTGTCCCTGA---AGCCAGAAAATCA 6013923 Query 112596 AATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTT 112655 |||||||||||||||||||||||| | ||||| || ||| | || |||| ||| || ||| Sbjct 6013922 AATATGAGACACCGTCCAATTGGTATTGGTGTTCAGGGTTTAGCTGATGCATTTATGCTT 6013863 Query 112656 TGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACA 112715 || | | || ||| | || || ||| | ||| | || ||||| ||| Sbjct 6013862 ATGCGTTATCCTTTCACTTCACCTGCCGCTAAAGAACTTAATAAGTTGATTTTTGAAACA 6013803 Query 112716 ATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAA 112775 || || || | || | || || | || | || || ||||||||| ||||| Sbjct 6013802 ATTTACCATGGAGCATTGGAAGCTTCATGTGAAGTAGCTGAACGTGATGGTCCTTATGAG 6013743 Query 112776 ACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAG 112835 || | ||| || ||||||| ||| |||| | ||||||| ||| |||| |||| || | Sbjct 6013742 ACATATGATGGATCTCCAGTATCAAAAGGTATTCTTCAATATGACATGT-GGAATGTCAA 6013684 Query 112836 ACCAA--GCTTCACTACGACTGGGACGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCT 112891 ||||| | || | | || ||||| || | || | | ||| ||| | | ||| | Sbjct 6013683 ACCAAGTGATTTA-TGGGATTGGGAAACTTTAAAAGCAGACATTGCAA--AACATGGTGT 6013627 Query 112892 TCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAA 112951 | || | | || | || ||||||||||| || || || ||||| || | || || Sbjct 6013626 AAGAAATTCTTTATTACTTGCTCCAATGCCAACTGCTTCAACTGCACAGATTCTAGGAAA 6013567 Query 112952 TAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 |||||||| ||||||| || || | ||||| || Sbjct 6013566 TAATGAATCTATTGAACCATATACTTCTAACATTTA 6013531 >seq2 Length=16759152 Score = 123 bits (136), Expect = 3e-23 Identities = 453/702 (65%), Gaps = 12/702 (2%) Strand=Plus/Plus Query 112296 TCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 112355 ||||| | || ||||||| ||||||||| |||| ||||| ||||| | || ||| Sbjct 8585420 TCTCAGATTGAAACTGGTATTCCATATATGGTTTATAAAGATCATTGTAATCGTAAAAGT 8585479 Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAAT-T 112414 |||||| | ||||| || ||| | |||| || || ||||| ||||| | ||| | Sbjct 8585480 AATCAACAAAATTTAGGAACGATTAGATGTTCAAATCTATGTACTGAAATTATTCAATAT 8585539 Query 112415 TACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 112474 | | ||| || | |||| ||||| | |||||||| || || | || ||| Sbjct 8585540 TGTTCTCCAAGCGAAGTTG-CTGTTTGTAATTTAGCATCAATTGCACTTAATATGTTTGT 8585598 Query 112475 GGATCCAGA-GACAAAGA-----CATTTGATTATGAAAAACTCCACGAAGTTACGAAAAC 112528 | | | | || ||| | ||||||| | | ||| || || || || || |||| Sbjct 8585599 TGTTATAAAAGAAAAAAAACCTACATTTGACTTTAAAATGCTTCATGATGTGACAAAAAT 8585658 Query 112529 TGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCG 112588 ||| |||| ||| |||| | | ||||||||| |||||||| || | || ||||| Sbjct 8585659 TGTAACAAGAAATTTAAATAAAATTATTGATATTAATTTTTATCCACTAGAAGAAGCTCG 8585718 Query 112589 TAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATT 112648 | ||| ||| | | || ||||||||||| | ||||| ||||| || || ||| ||| Sbjct 8585719 TTTATCAAATCTTAAGCATCGTCCAATTGGAATTGGTGTTCAAGGACTTGCTGATACATT 8585778 Query 112649 CATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATT 112708 | ||| | | | || || ||||| || || | ||| || || Sbjct 8585779 TTTGCTTATGAGGTATCCTTTCACATCACCAGAAGCTAAAGATCTTAATATAAAAATTTT 8585838 Query 112709 TGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCC 112768 ||| || || ||||| | || ||||| || | || ||| || || |||| Sbjct 8585839 TGAAACTATTTATCATGGTGCACTTGAAGCTTCCTGTGAATTGTCAAAGAAGTATGGATG 8585898 Query 112769 ATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGA 112828 |||||||| || | | ||||||||| || |||| | ||||| | |||||||| ||| Sbjct 8585899 TTATGAAACATTCAAAGATTCTCCAGCATCCAAAGGAATTCTTCAGTATGATATGT-GGA 8585957 Query 112829 AGGTGAGACCAA--GCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAG 112886 | || | |||| | || | | || ||||| | | ||| || || | Sbjct 8585958 ATGTTATTCCAAGTGATTTA-TGGGAATGGGATATTTTAAAGCAAGAAATTATACGTTTT 8586016 Query 112887 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 112946 |||||||| || | || || || |||||||| ||||| || || | ||||| | Sbjct 8586017 GGTCTTCGCAATTCATTATTAATTGCTCCAATGCCTACAGCATCTACATCTCAAATTCTT 8586076 Query 112947 GGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 112988 || || ||||||| ||||||| || || | || || ||| Sbjct 8586077 GGAAACAATGAATCTATTGAACCATATACTTCTAATATATAT 8586118 Score = 87.8 bits (96), Expect = 2e-12 Identities = 241/368 (65%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||| | || || | ||| || || ||| | ||||| | ||||| ||||| || Sbjct 9293313 TCAAATCTTCCAGGTCTAAGAAGTGCACTATCTAACATATCTGCACGATTTGTTGCAGCA 9293254 Query 15948 ATGACAACAATACCTGTTTCGT---TATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 || |||| || | | || | || |||||||||||| || | | || ||| Sbjct 9293253 ATAACAATAACAGAAGATTGTTCAGTACTAAAACCATCCATTTCAACAAGTAATTGATTA 9293194 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC---AGCACTGCGTTGCTTTCCC 16061 | ||| | ||| |||| || | ||||| ||| | |||| | || |||| Sbjct 9293193 AGAGTATTTTCTTGTTCTGAATGACCACCCATACTACCTTTACCACTTCTTTTTCTTCCA 9293134 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 16121 || ||||| || |||||||| || | ||| |||||| ||||| | ||| | |||| Sbjct 9293133 ACAGCATCTATTTCATCAATAAACAAGATACATGGTGAATTTTTTCTAGCCATAGCAAAC 9293074 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 | ||| ||||| | | || |||||||||||||| || | ||| | || | || Sbjct 9293073 ATATCACGTACTCTAGCAGGACCAACACCAACAAACATTTCAAGAAACTCTGATCCAGAT 9293014 Query 16182 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 | || || || ||||||| |||||| ||| ||||| || || | || ||||| Sbjct 9293013 ACTGTTATAAATGGTACATTAGCTTCACCAGCAGTGGCTTTAGCAAGTAATGTTTTACCT 9292954 Query 16242 GTACCTGG 16249 |||||||| Sbjct 9292953 GTACCTGG 9292946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741352497200