Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 127 2e-24 seq2 87.8 2e-12 >seq1 Length=11693564 Score = 127 bits (140), Expect = 2e-24 Identities = 305/455 (67%), Gaps = 15/455 (3%) Strand=Plus/Plus Query 110695 AGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC- 110753 || |||||||| || | || || | ||||||||||| ||||| | ||| | | ||| Sbjct 6014473 AGATCCAAAAATTCTAAAATGTCAGCATGCCATGGTTCTAGATATATAGCAAATGCTCCA 6014532 Query 110754 ---CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCAT 110810 ||| | ||| | |||| ||||||||||||||| || || || || | ||| Sbjct 6014533 GGTCTTTT-ATTTCCCCCTTGGTCAACATAGCGTGCTGTATTGTTAAAAACTCTCAACAT 6014591 Query 110811 AGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAAT 110870 || || | ||||| ||| |||||||||||| | ||| || ||| |||||||| Sbjct 6014592 TGGTATTAATCCATTAGATGTACCATTTGTACCACCAATAAAAGAACCATTAGCACGAAT 6014651 Query 110871 GTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAG 110930 || | || || |||||||| || || | || |||| |||||| | | | || Sbjct 6014652 ACAATGAACATTCAATCCAATACCGCCAGCAGATTTTGAAATTAATGCACATTGTTTAAG 6014711 Query 110931 TGTACCATAAATACCATCAATCGAATC----TGCCTTGTTGGCAATTAGAAAGCAAGAAG 110986 ||| |||| ||||| ||||| ||||| | ||||| | | ||||| || |||| Sbjct 6014712 AGTATCATATATACCTTCAATTGAATCATCAGACATTGTT---AGTAAGAAA-CACGAAG 6014767 Query 110987 ACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGAC 111046 ||| ||| ||||| ||||| ||||| || | ||| || | |||||| | ||| || Sbjct 6014768 ACAGCTGTGGACGTCTGGTTCCTGCATTAAATAATGTTGGAGAGGCATGAGTAAAC-CAC 6014826 Query 111047 CT-TGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCA 111105 | || ||||| | || ||||| || | | || | ||| | || ||||| ||| Sbjct 6014827 TTCTGAGACATATAGTCATATGTTTCAATAACAGAATTAATATCATCCCCATGAATTCCA 6014886 Query 111106 ATGGCAACTCGCATGAACATATATTGAGGCGTTTC 111140 | || || ||||| || | || ||| || |||| Sbjct 6014887 ACTGCCACACGCATTAATAAATGTTGTGGTCTTTC 6014921 >seq2 Length=16759152 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 |||||||| ||||||||||| |||||| ||| | || || || ||||||| || Sbjct 1001560 TTACCACGTAGTGGAAATACTCCATAAAAATCACGTCCTACAACACCAAGACCAGAAACT 1001619 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGTGCC 168549 || || ||||| |||||||| ||||| || | || || ||||| || ||| | | Sbjct 1001620 GCAAGCGTTTTGGCTGAATCTCCCTCAGTAAGAATAAGAGTACATTTCGAAGAATTTTTA 1001679 Query 168550 GTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACC 168587 || ||||||| || ||||| || | ||| || ||||| Sbjct 1001680 GTTCCAGCTTCATTAGCATCTTCAAGTTTTGGAATACC 1001717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975006103000