Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 seq2 93.3 5e-14 >seq1 Length=11693564 Score = 138 bits (152), Expect = 1e-27 Identities = 897/1414 (63%), Gaps = 55/1414 (4%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || ||||| | || || ||||||| |||||||||| || | || ||||| || || Sbjct 6013531 TAAATGTTAGAAGTATATGGTTCAATAGATTCATTATTTCCTAGAATCTGTGCAGTTGAA 6013590 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTG--ATGCGTT 106052 || ||||||||||| || | || | | || | | ||| | || ||| ||| | Sbjct 6013591 GCAGTTGGCATTGGAGCAAGTAATAAAGAATTTCTTACACCATGTT--TTGCAATGTCTG 6013648 Query 106053 CCTTGAGAACATCCCAGTCG--TAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTG 106110 | || | | ||||| || || | | |||||||| || |||| |||| ||| |||| Sbjct 6013649 CTTTTAAAGTTTCCCAATCCCATAAATCA-CTTGGTTTGACATTCC-ACATGTCATATTG 6013706 Query 106111 AAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGC 106170 ||| | |||| || ||||| || ||| |||||||||| | ||| | |||||| Sbjct 6013707 AAGAATACCTTTTGATACTGGAGATCCATCATATGTCTCATAAGGACCATCACGTTCAGC 6013766 Query 106171 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 106230 | |||||| || |||| | | | || || || |||||||| || ||| | Sbjct 6013767 TACTTCACATGAAGCTTCCAATGCTCCATGGTAAATTGTTTCAAAAATCAACTTATTAAG 6013826 Query 106231 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGAC 106289 || || || || |||| || | || || || || |||||| |||| || | || Sbjct 6013827 TTCTTTAGCGGCAGGTGAAGTGAAAGGATAACG-CATAAGCATAAATGCATCAGCTAAAC 6013885 Query 106290 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---A 106346 | |||||||| | |||||| || | ||||| |||||| || |||| || ||| | Sbjct 6013886 CCTGAACACCAATACCAATTGGACGGTGTCTCATATTTGATTTTCTGGCT---TCAGGGA 6013942 Query 106347 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 106406 | |||||| |||| ||||| | | || | |||||| || | ||| || | | Sbjct 6013943 CAGGATAATAATTGACATCAATAATTTTATTCAAATTTTTAGTTAGAATTTTAGAAACAA 6014002 Query 106407 CATGAAGTTTTTCATAATCAAAAG------TGCGAGTCT----CTTCATTGACATACTTT 106456 ||||||||| || ||| ||||| | | | ||| ||||| ||| | | Sbjct 6014003 CATGAAGTTGTTTGAAATTAAAAGCAGGTTTACCA-TCTACAACTTCA---ACAAATCTA 6014058 Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 ||| || || ||| | | ||| || ||||| ||||| | || || | | Sbjct 6014059 TTAAGAGCAATAGATCCTAGATTACATACAGCAACTTCATCTGGTGCACAATATTCAACA 6014118 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 ||||| ||||| || || |||| ||||| || || | ||| | ||| ||||| || Sbjct 6014119 ATTTCAGTACATAAATTTGAACATTTAATGGTTCCAAGATTTTGTTGATTACTTTTACGA 6014178 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTG-AGAAT 106635 || || ||| ||||| | ||| || || || || || || | || |||| | || Sbjct 6014179 TTACAATGATCTTTGTAAACCATATAAGGTGTTCCGGTTTCAATTTG--ACTTTCACAAA 6014236 Query 106636 TGCCTT-CCACACATCGGCGGCTGGTACAATGGCGT-TGGCCCGTCCCTCCGCCTCGTAC 106693 | || ||| | | | ||| || || | || ||| ||| || ||| Sbjct 6014237 TCTTTTGCCAAATAACTCTGGCCTTTATT-TGTTTTCTGTAACGTTTCTCATTTTCATAC 6014295 Query 106694 TTTGTG-TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 106752 || ||| || | | ||||| |||||||| | || || || || | || Sbjct 6014296 TT-GTGATATAATTCCTCAAAAGCCTCACCCCAAGTATCCTCAAGTCCAGGACATTCGTG 6014354 Query 106753 TGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 106812 || || | | |||||| | | | | ||| || || ||||| || | || ||||| Sbjct 6014355 GGGGCACATCAAAGACCAATAAGAGTCTTTCTCTACACGTTTCATAAATAAATCAGGAAT 6014414 Query 106813 CCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 106872 ||| || |||| | ||| | | | | ||||| ||| || || ||| Sbjct 6014415 CCAAAGACCATAAAATAAATCACGAGCTCTTTCTTCTTCAGGGCCTGTATTTT-TCTTAA 6014473 Query 106873 C-TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC-- 106929 || | || || | || || || |||||||| || ||||| | || | | ||| Sbjct 6014474 GATCCAAAAATTCTAAAATGTCAGCATGCCATGGTTCTAGATATATAGCAAATGCTCCAG 6014533 Query 106930 --CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987 |||| ||| |||| | |||||||| ||||| |||||| || | | |||| Sbjct 6014534 GTCTTTTATTTCCCC-CTTGGTCAACATAGCGTGCTGTATTGTTAAAAACTCTCAACATT 6014592 Query 106988 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 107047 || || | |||| ||| ||||||||| || | |||| ||| ||| || | | | Sbjct 6014593 GGTATTAATCCATTAGATGTACCATTTGTACCACCAATAAAAGAACCATTAGCACGAATA 6014652 Query 107048 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 107107 ||| | | || |||||||| ||||| | ||||| ||| ||||| | ||||| Sbjct 6014653 CAATGAACATTCAATCCAATACCGCCAGCAGATTTTGAAATTAATGCACATTGTTTAAGA 6014712 Query 107108 GTTCCATAGATACCGTTGATTGAGTCCTCC----TTGTTGGCGATAAGGAAGCAACTGGA 107163 || |||| ||||| | ||||| || || ||||| | |||| || || || Sbjct 6014713 GTATCATATATACCTTCAATTGAATCATCAGACATTGTTAG---TAAGAAA-CACGAAGA 6014768 Query 107164 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 107223 || ||| || | | || || ||||| || | ||||| | || ||| | ||| || Sbjct 6014769 CAGCTGTGGACGTCTGGTTCCTGCATTAAATAATGTTGGAGAGGCATGAGTAAACC-ACT 6014827 Query 107224 T-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 107282 | || ||||| | ||| ||||| || | ||||||| ||| || ||||| || || || | Sbjct 6014828 TCTGAGACATATAGTCATATGTTTCAATAACAGAATTAATATCATCCCCATGAATTCCAA 6014887 Query 107283 TGGCCACACGCATAAACATGTATTGGGGTGTTTC 107316 ||||||||||| || | | ||| ||| |||| Sbjct 6014888 CTGCCACACGCATTAATAAATGTTGTGGTCTTTC 6014921 >seq2 Length=16759152 Score = 93.3 bits (102), Expect = 5e-14 Identities = 242/368 (66%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 ||||| | || || | ||| || || ||| | ||||| | ||||| || || || Sbjct 9293313 TCAAATCTTCCAGGTCTAAGAAGTGCACTATCTAACATATCTGCACGATTTGTTGCAGCA 9293254 Query 9255 ATGACAACAATACCTGTTT---CATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || |||| || | | || || || |||||||||||| || | | ||| ||| Sbjct 9293253 ATAACAATAACAGAAGATTGTTCAGTACTAAAACCATCCATTTCAACAAGTAATTGATTA 9293194 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC---AGCACTGCGTTGCTTTCCC 9368 | ||| | ||| |||| || | ||||| ||| | |||| | || |||| Sbjct 9293193 AGAGTATTTTCTTGTTCTGAATGACCACCCATACTACCTTTACCACTTCTTTTTCTTCCA 9293134 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || |||||||| || | ||||||||| ||||| | || || |||| Sbjct 9293133 ACAGCATCTATTTCATCAATAAACAAGATACATGGTGAATTTTTTCTAGCCATAGCAAAC 9293074 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 | ||| || || || | || |||||||||||||| || | ||| | || | || Sbjct 9293073 ATATCACGTACTCTAGCAGGACCAACACCAACAAACATTTCAAGAAACTCTGATCCAGAT 9293014 Query 9489 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 | || || || ||||||| |||||| ||| ||||| || || | || ||||| Sbjct 9293013 ACTGTTATAAATGGTACATTAGCTTCACCAGCAGTGGCTTTAGCAAGTAATGTTTTACCT 9292954 Query 9549 GTACCTGG 9556 |||||||| Sbjct 9292953 GTACCTGG 9292946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979804407400