Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq1 138 1e-27
seq2 93.3 5e-14
>seq1
Length=11693564
Score = 138 bits (152), Expect = 1e-27
Identities = 897/1414 (63%), Gaps = 55/1414 (4%)
Strand=Plus/Plus
Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994
|| ||||| | || || ||||||| |||||||||| || | || ||||| || ||
Sbjct 6013531 TAAATGTTAGAAGTATATGGTTCAATAGATTCATTATTTCCTAGAATCTGTGCAGTTGAA 6013590
Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTG--ATGCGTT 106052
|| ||||||||||| || | || | | || | | ||| | || ||| ||| |
Sbjct 6013591 GCAGTTGGCATTGGAGCAAGTAATAAAGAATTTCTTACACCATGTT--TTGCAATGTCTG 6013648
Query 106053 CCTTGAGAACATCCCAGTCG--TAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTG 106110
| || | | ||||| || || | | |||||||| || |||| |||| ||| ||||
Sbjct 6013649 CTTTTAAAGTTTCCCAATCCCATAAATCA-CTTGGTTTGACATTCC-ACATGTCATATTG 6013706
Query 106111 AAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGC 106170
||| | |||| || ||||| || ||| |||||||||| | ||| | ||||||
Sbjct 6013707 AAGAATACCTTTTGATACTGGAGATCCATCATATGTCTCATAAGGACCATCACGTTCAGC 6013766
Query 106171 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 106230
| |||||| || |||| | | | || || || |||||||| || ||| |
Sbjct 6013767 TACTTCACATGAAGCTTCCAATGCTCCATGGTAAATTGTTTCAAAAATCAACTTATTAAG 6013826
Query 106231 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGAC 106289
|| || || || |||| || | || || || || |||||| |||| || | ||
Sbjct 6013827 TTCTTTAGCGGCAGGTGAAGTGAAAGGATAACG-CATAAGCATAAATGCATCAGCTAAAC 6013885
Query 106290 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---A 106346
| |||||||| | |||||| || | ||||| |||||| || |||| || ||| |
Sbjct 6013886 CCTGAACACCAATACCAATTGGACGGTGTCTCATATTTGATTTTCTGGCT---TCAGGGA 6013942
Query 106347 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 106406
| |||||| |||| ||||| | | || | |||||| || | ||| || | |
Sbjct 6013943 CAGGATAATAATTGACATCAATAATTTTATTCAAATTTTTAGTTAGAATTTTAGAAACAA 6014002
Query 106407 CATGAAGTTTTTCATAATCAAAAG------TGCGAGTCT----CTTCATTGACATACTTT 106456
||||||||| || ||| ||||| | | | ||| ||||| ||| | |
Sbjct 6014003 CATGAAGTTGTTTGAAATTAAAAGCAGGTTTACCA-TCTACAACTTCA---ACAAATCTA 6014058
Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516
||| || || ||| | | ||| || ||||| ||||| | || || | |
Sbjct 6014059 TTAAGAGCAATAGATCCTAGATTACATACAGCAACTTCATCTGGTGCACAATATTCAACA 6014118
Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576
||||| ||||| || || |||| ||||| || || | ||| | ||| ||||| ||
Sbjct 6014119 ATTTCAGTACATAAATTTGAACATTTAATGGTTCCAAGATTTTGTTGATTACTTTTACGA 6014178
Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTG-AGAAT 106635
|| || ||| ||||| | ||| || || || || || || | || |||| | ||
Sbjct 6014179 TTACAATGATCTTTGTAAACCATATAAGGTGTTCCGGTTTCAATTTG--ACTTTCACAAA 6014236
Query 106636 TGCCTT-CCACACATCGGCGGCTGGTACAATGGCGT-TGGCCCGTCCCTCCGCCTCGTAC 106693
| || ||| | | | ||| || || | || ||| ||| || |||
Sbjct 6014237 TCTTTTGCCAAATAACTCTGGCCTTTATT-TGTTTTCTGTAACGTTTCTCATTTTCATAC 6014295
Query 106694 TTTGTG-TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 106752
|| ||| || | | ||||| |||||||| | || || || || | ||
Sbjct 6014296 TT-GTGATATAATTCCTCAAAAGCCTCACCCCAAGTATCCTCAAGTCCAGGACATTCGTG 6014354
Query 106753 TGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 106812
|| || | | |||||| | | | | ||| || || ||||| || | || |||||
Sbjct 6014355 GGGGCACATCAAAGACCAATAAGAGTCTTTCTCTACACGTTTCATAAATAAATCAGGAAT 6014414
Query 106813 CCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 106872
||| || |||| | ||| | | | | ||||| ||| || || |||
Sbjct 6014415 CCAAAGACCATAAAATAAATCACGAGCTCTTTCTTCTTCAGGGCCTGTATTTT-TCTTAA 6014473
Query 106873 C-TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC-- 106929
|| | || || | || || || |||||||| || ||||| | || | | |||
Sbjct 6014474 GATCCAAAAATTCTAAAATGTCAGCATGCCATGGTTCTAGATATATAGCAAATGCTCCAG 6014533
Query 106930 --CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987
|||| ||| |||| | |||||||| ||||| |||||| || | | ||||
Sbjct 6014534 GTCTTTTATTTCCCC-CTTGGTCAACATAGCGTGCTGTATTGTTAAAAACTCTCAACATT 6014592
Query 106988 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 107047
|| || | |||| ||| ||||||||| || | |||| ||| ||| || | | |
Sbjct 6014593 GGTATTAATCCATTAGATGTACCATTTGTACCACCAATAAAAGAACCATTAGCACGAATA 6014652
Query 107048 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 107107
||| | | || |||||||| ||||| | ||||| ||| ||||| | |||||
Sbjct 6014653 CAATGAACATTCAATCCAATACCGCCAGCAGATTTTGAAATTAATGCACATTGTTTAAGA 6014712
Query 107108 GTTCCATAGATACCGTTGATTGAGTCCTCC----TTGTTGGCGATAAGGAAGCAACTGGA 107163
|| |||| ||||| | ||||| || || ||||| | |||| || || ||
Sbjct 6014713 GTATCATATATACCTTCAATTGAATCATCAGACATTGTTAG---TAAGAAA-CACGAAGA 6014768
Query 107164 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 107223
|| ||| || | | || || ||||| || | ||||| | || ||| | ||| ||
Sbjct 6014769 CAGCTGTGGACGTCTGGTTCCTGCATTAAATAATGTTGGAGAGGCATGAGTAAACC-ACT 6014827
Query 107224 T-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 107282
| || ||||| | ||| ||||| || | ||||||| ||| || ||||| || || || |
Sbjct 6014828 TCTGAGACATATAGTCATATGTTTCAATAACAGAATTAATATCATCCCCATGAATTCCAA 6014887
Query 107283 TGGCCACACGCATAAACATGTATTGGGGTGTTTC 107316
||||||||||| || | | ||| ||| ||||
Sbjct 6014888 CTGCCACACGCATTAATAAATGTTGTGGTCTTTC 6014921
>seq2
Length=16759152
Score = 93.3 bits (102), Expect = 5e-14
Identities = 242/368 (66%), Gaps = 6/368 (2%)
Strand=Plus/Minus
Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254
||||| | || || | ||| || || ||| | ||||| | ||||| || || ||
Sbjct 9293313 TCAAATCTTCCAGGTCTAAGAAGTGCACTATCTAACATATCTGCACGATTTGTTGCAGCA 9293254
Query 9255 ATGACAACAATACCTGTTT---CATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311
|| |||| || | | || || || |||||||||||| || | | ||| |||
Sbjct 9293253 ATAACAATAACAGAAGATTGTTCAGTACTAAAACCATCCATTTCAACAAGTAATTGATTA 9293194
Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC---AGCACTGCGTTGCTTTCCC 9368
| ||| | ||| |||| || | ||||| ||| | |||| | || ||||
Sbjct 9293193 AGAGTATTTTCTTGTTCTGAATGACCACCCATACTACCTTTACCACTTCTTTTTCTTCCA 9293134
Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428
|| ||||| || |||||||| || | ||||||||| ||||| | || || ||||
Sbjct 9293133 ACAGCATCTATTTCATCAATAAACAAGATACATGGTGAATTTTTTCTAGCCATAGCAAAC 9293074
Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488
| ||| || || || | || |||||||||||||| || | ||| | || | ||
Sbjct 9293073 ATATCACGTACTCTAGCAGGACCAACACCAACAAACATTTCAAGAAACTCTGATCCAGAT 9293014
Query 9489 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548
| || || || ||||||| |||||| ||| ||||| || || | || |||||
Sbjct 9293013 ACTGTTATAAATGGTACATTAGCTTCACCAGCAGTGGCTTTAGCAAGTAATGTTTTACCT 9292954
Query 9549 GTACCTGG 9556
||||||||
Sbjct 9292953 GTACCTGG 9292946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589979804407400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |