Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2 286 4e-72 >seq2 Length=16759152 Score = 286 bits (316), Expect = 4e-72 Identities = 497/713 (70%), Gaps = 10/713 (1%) Strand=Plus/Minus Query 154418 TAAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGCAGTTGCACAATGAAATTAAA 154477 ||||||||| || | ||| || ||| | || | || || |||||||||||||| Sbjct 12850226 TAAAGATTTATCTCTTGTACATTCAATGATACCTTTAGGATCATGTACAATGAAATTAAA 12850167 Query 154478 TGCAGCAGCAGAACTAATGCCTGTGTCATGGGAAGAGTTTG-CTAACGTGCATCCACATA 154536 ||| |||||||| | | || | ||||| | ||||| | || | |||||| | Sbjct 12850166 TGCTTCAGCAGAAATGTTACCCTTAACATGGCCA-AGTTTATCAAATATACATCCATTTG 12850108 Query 154537 CACCTAT-GATACAGACCATGGGTTATCAGAAAATTATAGATGACTTACAGAAATGGTTA 154595 ||| | ||| || | | |||||||| |||||| | ||||| | | || ||| | Sbjct 12850107 TACCAGTTGATCAAG-CTAAAGGTTATCAAAAAATTTTTAATGACCTTGAAAAGTGGCTT 12850049 Query 154596 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 154655 ||||| || || || | |||| | | || | ||||| || ||| | | ||||| Sbjct 12850048 TGTGAAATTACTGGTTATGATAATTTTTCTCTTCAACCAAATAGTGGAGCTAATGGTGAA 12849989 Query 154656 TATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAAT 154715 |||||||| | ||||| || ||| || | | || ||| | || || |||||| Sbjct 12849988 TATGCAGGTTTATTAGCTATTAAAGGTTATCTTAAATCTATTGGACAAGAAAATAGAAAT 12849929 Query 154716 GTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGG 154775 | ||| | |||||| || || |||||||| |||||||| |||| ||| || Sbjct 12849928 ATTTGTCTTATACCATCATCTGCTCATGGAACAAATCCTGCCTCTGCTTCAATGTCAAAT 12849869 Query 154776 ATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAG 154835 | |||||||| ||| | | ||| | ||||||| || | ||||||||| Sbjct 12849868 TTTAAAGTTGTCCCTGTTGAATCAGATAAACATGGTAATATTAATTACAAAGATCTTTCT 12849809 Query 154836 AAGAAAGCAATCATGAATACATT--TGAACTGTCATG-TATTATGATTACATACCCATCT 154892 | ||||||| | |||||| | |||||| | || ||| ||| | || || |||||| Sbjct 12849808 ATGAAAGCAGAAA--AATACACTAATGAACT-TGGTGCTATAATGGTAACTTATCCATCT 12849752 Query 154893 ACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGT 154952 ||||||||||| ||||||| ||| ||| | | ||||| | |||||||| ||||| Sbjct 12849751 ACACATGGTGTTTTTGAAAGTAATATTGTTGATGTTTGTAATAAAGTTCATGAAAATGGA 12849692 Query 154953 GGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGT 155012 || ||||| |||||||||||||||||| | ||||||||||||||| || | |||| | Sbjct 12849691 GGACAGGTTTATCTTGATGGAGCAAATTTCAATGCACAGGTAGGATTATGTAGACCAGGA 12849632 Query 155013 GAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGA 155072 || |||||| ||||| | ||| |||| | |||||||| |||||||||||||||||| Sbjct 12849631 GATTATGGTAGTGATGTGTCACATTTAAATCTTCATAAAACTTTCTGTATTCCACATGGA 12849572 Query 155073 GGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATT 155125 ||||| |||||||| | |||||||| ||||| || ||||| |||| || Sbjct 12849571 GGTGGTGGTCCTGGAATGGGTCCTATTGGTGTTAAAAGTCATCTTGCACCTTT 12849519 Score = 82.4 bits (90), Expect = 9e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 153288 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 153347 || || || |||||| |||| ||| |||| |||||| | |||| |||||| |||| ||| Sbjct 12851386 TATACACCATATCAACCTGAAATAGCTCAAGGAAGACTTGAAGGTTTATTAAATTTTCAA 12851327 Query 153348 ACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCA 153407 || | || | || | || || | | ||| |||| || ||| || | ||||||||| Sbjct 12851326 ACAGTTATTAGTGATTTGACTGGCCTTCAAATTTCAAATGCTTCTTTACTTGATGAAGCA 12851267 Query 153408 ACTGCAGCAGCAGAAGCAATGCTATTAGCATATAATTCTACAA 153450 ||||| ||||||| ||| ||||||| || |||||| Sbjct 12851266 ACTGCTTGCTCAGAAGCTATGGCTTTAGCATGTAGAGCTACAA 12851224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579211822578400