Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq2 286 4e-72
>seq2
Length=16759152
Score = 286 bits (316), Expect = 4e-72
Identities = 497/713 (70%), Gaps = 10/713 (1%)
Strand=Plus/Minus
Query 154418 TAAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGCAGTTGCACAATGAAATTAAA 154477
||||||||| || | ||| || ||| | || | || || ||||||||||||||
Sbjct 12850226 TAAAGATTTATCTCTTGTACATTCAATGATACCTTTAGGATCATGTACAATGAAATTAAA 12850167
Query 154478 TGCAGCAGCAGAACTAATGCCTGTGTCATGGGAAGAGTTTG-CTAACGTGCATCCACATA 154536
||| |||||||| | | || | ||||| | ||||| | || | |||||| |
Sbjct 12850166 TGCTTCAGCAGAAATGTTACCCTTAACATGGCCA-AGTTTATCAAATATACATCCATTTG 12850108
Query 154537 CACCTAT-GATACAGACCATGGGTTATCAGAAAATTATAGATGACTTACAGAAATGGTTA 154595
||| | ||| || | | |||||||| |||||| | ||||| | | || ||| |
Sbjct 12850107 TACCAGTTGATCAAG-CTAAAGGTTATCAAAAAATTTTTAATGACCTTGAAAAGTGGCTT 12850049
Query 154596 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 154655
||||| || || || | |||| | | || | ||||| || ||| | | |||||
Sbjct 12850048 TGTGAAATTACTGGTTATGATAATTTTTCTCTTCAACCAAATAGTGGAGCTAATGGTGAA 12849989
Query 154656 TATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAAT 154715
|||||||| | ||||| || ||| || | | || ||| | || || ||||||
Sbjct 12849988 TATGCAGGTTTATTAGCTATTAAAGGTTATCTTAAATCTATTGGACAAGAAAATAGAAAT 12849929
Query 154716 GTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGG 154775
| ||| | |||||| || || |||||||| |||||||| |||| ||| ||
Sbjct 12849928 ATTTGTCTTATACCATCATCTGCTCATGGAACAAATCCTGCCTCTGCTTCAATGTCAAAT 12849869
Query 154776 ATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAG 154835
| |||||||| ||| | | ||| | ||||||| || | |||||||||
Sbjct 12849868 TTTAAAGTTGTCCCTGTTGAATCAGATAAACATGGTAATATTAATTACAAAGATCTTTCT 12849809
Query 154836 AAGAAAGCAATCATGAATACATT--TGAACTGTCATG-TATTATGATTACATACCCATCT 154892
| ||||||| | |||||| | |||||| | || ||| ||| | || || ||||||
Sbjct 12849808 ATGAAAGCAGAAA--AATACACTAATGAACT-TGGTGCTATAATGGTAACTTATCCATCT 12849752
Query 154893 ACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGT 154952
||||||||||| ||||||| ||| ||| | | ||||| | |||||||| |||||
Sbjct 12849751 ACACATGGTGTTTTTGAAAGTAATATTGTTGATGTTTGTAATAAAGTTCATGAAAATGGA 12849692
Query 154953 GGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGT 155012
|| ||||| |||||||||||||||||| | ||||||||||||||| || | |||| |
Sbjct 12849691 GGACAGGTTTATCTTGATGGAGCAAATTTCAATGCACAGGTAGGATTATGTAGACCAGGA 12849632
Query 155013 GAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGA 155072
|| |||||| ||||| | ||| |||| | |||||||| ||||||||||||||||||
Sbjct 12849631 GATTATGGTAGTGATGTGTCACATTTAAATCTTCATAAAACTTTCTGTATTCCACATGGA 12849572
Query 155073 GGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATT 155125
||||| |||||||| | |||||||| ||||| || ||||| |||| ||
Sbjct 12849571 GGTGGTGGTCCTGGAATGGGTCCTATTGGTGTTAAAAGTCATCTTGCACCTTT 12849519
Score = 82.4 bits (90), Expect = 9e-11
Identities = 116/163 (71%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 153288 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 153347
|| || || |||||| |||| ||| |||| |||||| | |||| |||||| |||| |||
Sbjct 12851386 TATACACCATATCAACCTGAAATAGCTCAAGGAAGACTTGAAGGTTTATTAAATTTTCAA 12851327
Query 153348 ACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCA 153407
|| | || | || | || || | | ||| |||| || ||| || | |||||||||
Sbjct 12851326 ACAGTTATTAGTGATTTGACTGGCCTTCAAATTTCAAATGCTTCTTTACTTGATGAAGCA 12851267
Query 153408 ACTGCAGCAGCAGAAGCAATGCTATTAGCATATAATTCTACAA 153450
||||| ||||||| ||| ||||||| || ||||||
Sbjct 12851266 ACTGCTTGCTCAGAAGCTATGGCTTTAGCATGTAGAGCTACAA 12851224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579211822578400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |