Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2 264 1e-65 >seq2 Length=16759152 Score = 264 bits (292), Expect = 1e-65 Identities = 530/773 (69%), Gaps = 12/773 (2%) Strand=Plus/Minus Query 159034 GTATTTAAAAAATATCATAGTGAGACTGACATGATGAGATATATCTAT-GAGTTAGCATC 159092 |||||||| | ||||||| ||| | | || | |||||||| | || || | | Sbjct 12850285 GTATTTAATACATATCATTCTGAAATGGCTATTACAAGATATATGAAAAGACTT-GAAAA 12850227 Query 159093 AAAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAA 159152 |||||||| || | ||| || ||| | || | || ||||| |||||| |||| Sbjct 12850226 TAAAGATTTATCTCTTGTACATTCAATGATACCTTTAGGATCATGTACAATGAAATTAAA 12850167 Query 159153 CGCAGCATCAGAACTGATGCCTGTGTCATGGGAAGAGTTTG-CTAACGTGCATCCACATA 159211 || || ||||| || | || | ||||| | ||||| | || | |||||| | Sbjct 12850166 TGCTTCAGCAGAAATGTTACCCTTAACATGGCCA-AGTTTATCAAATATACATCCATTTG 12850108 Query 159212 CACCTAT-GATACAGACCATGGGTTATCAAAAAATTATAGATGACTTACAGAAATGGTTA 159270 ||| | ||| || | | ||||||||||||||| | ||||| | | || ||| | Sbjct 12850107 TACCAGTTGATCAAG-CTAAAGGTTATCAAAAAATTTTTAATGACCTTGAAAAGTGGCTT 12850049 Query 159271 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 159330 ||||| || || || | |||| | | || | ||||| || ||| | | ||||| Sbjct 12850048 TGTGAAATTACTGGTTATGATAATTTTTCTCTTCAACCAAATAGTGGAGCTAATGGTGAA 12849989 Query 159331 TATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAAT 159390 |||||||| | ||||| || ||| || | | || ||| | || || |||||| Sbjct 12849988 TATGCAGGTTTATTAGCTATTAAAGGTTATCTTAAATCTATTGGACAAGAAAATAGAAAT 12849929 Query 159391 GTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGG 159450 | ||| | |||||| || || |||||||| |||||||| || || ||| || Sbjct 12849928 ATTTGTCTTATACCATCATCTGCTCATGGAACAAATCCTGCCTCTGCTTCAATGTCAAAT 12849869 Query 159451 ATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAG 159510 | |||||||| ||| | | ||| | |||| || || | ||||||||| Sbjct 12849868 TTTAAAGTTGTCCCTGTTGAATCAGATAAACATGGTAATATTAATTACAAAGATCTTTCT 12849809 Query 159511 AAGAAAGCAATCATGAATACATT--TGAACTGTCATG-TATTATGATTACATATCCATCT 159567 | ||||||| | |||||| | |||||| | || ||| ||| | || ||||||||| Sbjct 12849808 ATGAAAGCAGAAA--AATACACTAATGAACT-TGGTGCTATAATGGTAACTTATCCATCT 12849752 Query 159568 ACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGT 159627 ||||||||||| ||||||| || || | | ||||| | |||||||| ||||| Sbjct 12849751 ACACATGGTGTTTTTGAAAGTAATATTGTTGATGTTTGTAATAAAGTTCATGAAAATGGA 12849692 Query 159628 GGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGT 159687 || ||||| ||||||||||| |||||| | |||||||||||||| || | |||| | Sbjct 12849691 GGACAGGTTTATCTTGATGGAGCAAATTTCAATGCACAGGTAGGATTATGTAGACCAGGA 12849632 Query 159688 GACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGA 159747 || |||||| ||||| | ||| |||| | ||||| || |||||||||||||||||| Sbjct 12849631 GATTATGGTAGTGATGTGTCACATTTAAATCTTCATAAAACTTTCTGTATTCCACATGGA 12849572 Query 159748 GGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATT 159800 ||||| |||||||| | |||||||||||||| || ||||| |||| || Sbjct 12849571 GGTGGTGGTCCTGGAATGGGTCCTATTGGTGTTAAAAGTCATCTTGCACCTTT 12849519 Score = 82.4 bits (90), Expect = 9e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 157963 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 158022 || || || |||||| |||| ||| |||| |||||| | |||| |||||| |||| ||| Sbjct 12851386 TATACACCATATCAACCTGAAATAGCTCAAGGAAGACTTGAAGGTTTATTAAATTTTCAA 12851327 Query 158023 ACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCA 158082 || | || | || | || || || | || |||| || ||| || | ||||||||| Sbjct 12851326 ACAGTTATTAGTGATTTGACTGGCCTTCAAATTTCAAATGCTTCTTTACTTGATGAAGCA 12851267 Query 158083 ACTGCAGCAGCAGAAGCAATGCTGTTAGCATATAATTCTACAA 158125 ||||| ||||||| ||| ||||||| || |||||| Sbjct 12851266 ACTGCTTGCTCAGAAGCTATGGCTTTAGCATGTAGAGCTACAA 12851224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588050207663600