Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq2 264 1e-65
>seq2
Length=16759152
Score = 264 bits (292), Expect = 1e-65
Identities = 530/773 (69%), Gaps = 12/773 (2%)
Strand=Plus/Minus
Query 159034 GTATTTAAAAAATATCATAGTGAGACTGACATGATGAGATATATCTAT-GAGTTAGCATC 159092
|||||||| | ||||||| ||| | | || | |||||||| | || || | |
Sbjct 12850285 GTATTTAATACATATCATTCTGAAATGGCTATTACAAGATATATGAAAAGACTT-GAAAA 12850227
Query 159093 AAAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAA 159152
|||||||| || | ||| || ||| | || | || ||||| |||||| ||||
Sbjct 12850226 TAAAGATTTATCTCTTGTACATTCAATGATACCTTTAGGATCATGTACAATGAAATTAAA 12850167
Query 159153 CGCAGCATCAGAACTGATGCCTGTGTCATGGGAAGAGTTTG-CTAACGTGCATCCACATA 159211
|| || ||||| || | || | ||||| | ||||| | || | |||||| |
Sbjct 12850166 TGCTTCAGCAGAAATGTTACCCTTAACATGGCCA-AGTTTATCAAATATACATCCATTTG 12850108
Query 159212 CACCTAT-GATACAGACCATGGGTTATCAAAAAATTATAGATGACTTACAGAAATGGTTA 159270
||| | ||| || | | ||||||||||||||| | ||||| | | || ||| |
Sbjct 12850107 TACCAGTTGATCAAG-CTAAAGGTTATCAAAAAATTTTTAATGACCTTGAAAAGTGGCTT 12850049
Query 159271 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 159330
||||| || || || | |||| | | || | ||||| || ||| | | |||||
Sbjct 12850048 TGTGAAATTACTGGTTATGATAATTTTTCTCTTCAACCAAATAGTGGAGCTAATGGTGAA 12849989
Query 159331 TATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAAT 159390
|||||||| | ||||| || ||| || | | || ||| | || || ||||||
Sbjct 12849988 TATGCAGGTTTATTAGCTATTAAAGGTTATCTTAAATCTATTGGACAAGAAAATAGAAAT 12849929
Query 159391 GTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGG 159450
| ||| | |||||| || || |||||||| |||||||| || || ||| ||
Sbjct 12849928 ATTTGTCTTATACCATCATCTGCTCATGGAACAAATCCTGCCTCTGCTTCAATGTCAAAT 12849869
Query 159451 ATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAG 159510
| |||||||| ||| | | ||| | |||| || || | |||||||||
Sbjct 12849868 TTTAAAGTTGTCCCTGTTGAATCAGATAAACATGGTAATATTAATTACAAAGATCTTTCT 12849809
Query 159511 AAGAAAGCAATCATGAATACATT--TGAACTGTCATG-TATTATGATTACATATCCATCT 159567
| ||||||| | |||||| | |||||| | || ||| ||| | || |||||||||
Sbjct 12849808 ATGAAAGCAGAAA--AATACACTAATGAACT-TGGTGCTATAATGGTAACTTATCCATCT 12849752
Query 159568 ACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGT 159627
||||||||||| ||||||| || || | | ||||| | |||||||| |||||
Sbjct 12849751 ACACATGGTGTTTTTGAAAGTAATATTGTTGATGTTTGTAATAAAGTTCATGAAAATGGA 12849692
Query 159628 GGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGT 159687
|| ||||| ||||||||||| |||||| | |||||||||||||| || | |||| |
Sbjct 12849691 GGACAGGTTTATCTTGATGGAGCAAATTTCAATGCACAGGTAGGATTATGTAGACCAGGA 12849632
Query 159688 GACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGA 159747
|| |||||| ||||| | ||| |||| | ||||| || ||||||||||||||||||
Sbjct 12849631 GATTATGGTAGTGATGTGTCACATTTAAATCTTCATAAAACTTTCTGTATTCCACATGGA 12849572
Query 159748 GGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATT 159800
||||| |||||||| | |||||||||||||| || ||||| |||| ||
Sbjct 12849571 GGTGGTGGTCCTGGAATGGGTCCTATTGGTGTTAAAAGTCATCTTGCACCTTT 12849519
Score = 82.4 bits (90), Expect = 9e-11
Identities = 116/163 (71%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 157963 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 158022
|| || || |||||| |||| ||| |||| |||||| | |||| |||||| |||| |||
Sbjct 12851386 TATACACCATATCAACCTGAAATAGCTCAAGGAAGACTTGAAGGTTTATTAAATTTTCAA 12851327
Query 158023 ACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCA 158082
|| | || | || | || || || | || |||| || ||| || | |||||||||
Sbjct 12851326 ACAGTTATTAGTGATTTGACTGGCCTTCAAATTTCAAATGCTTCTTTACTTGATGAAGCA 12851267
Query 158083 ACTGCAGCAGCAGAAGCAATGCTGTTAGCATATAATTCTACAA 158125
||||| ||||||| ||| ||||||| || ||||||
Sbjct 12851266 ACTGCTTGCTCAGAAGCTATGGCTTTAGCATGTAGAGCTACAA 12851224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588050207663600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |