Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2 181 2e-40 >seq2 Length=16759152 Score = 181 bits (200), Expect = 2e-40 Identities = 162/203 (80%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| || |||||||| |||||||| || | |||||||| |||||||| || || Sbjct 10682260 TGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGT 10682201 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | || |||||| ||||| ||||| ||||| || |||||||||||| Sbjct 10682200 TTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCTTGAATTTTT 10682141 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| || ||||||||||| || ||| |||||||| |||| ||||||||||| Sbjct 10682140 GATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTT 10682081 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || | |||||| Sbjct 10682080 AAAGTCTTGACAAAAATTTGCAT 10682058 Score = 176 bits (194), Expect = 1e-38 Identities = 165/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| ||||||||||| ||||||||||| | |||||||| |||||||| Sbjct 10682951 AACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTC 10682892 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || || || || || | || |||||||||||||||||| ||||| || ||||| Sbjct 10682891 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTG 10682832 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || ||| ||||| || ||||||||||| ||| ||| |||||||| |||| || || Sbjct 10682831 GATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGTTTT 10682772 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || || || | ||||| Sbjct 10682771 ACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742 Score = 172 bits (190), Expect = 1e-37 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| |||||||||||||| |||||||| | |||||| || |||||||| Sbjct 10682039 AACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTC 10681980 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || || || || || | || ||||||||||||||| || ||||| || ||||| Sbjct 10681979 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTG 10681920 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||||| |||||||| || || ||||| || ||| |||||||| |||| || || Sbjct 10681919 AATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTT 10681860 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || || || | ||||| Sbjct 10681859 ACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| || || ||||| ||||| || || | ||||||||| |||||||| || || Sbjct 10683172 TGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCAAGTTGT 10683113 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | || |||||| ||||||||||| ||||| ||||||||||| ||| Sbjct 10683112 TTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATCTTT 10683053 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || || |||||||| || ||| |||||||| |||| ||||||||||| Sbjct 10683052 GATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTT 10682993 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || | |||||| Sbjct 10682992 AAAGTCTTGACAAAAATTTGCAT 10682970 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| ||||| ||||| |||||||| || | |||||||| |||||||| Sbjct 10682495 AACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTC 10682436 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || || || ||||| | || |||||| ||||||||||| ||||| || ||||| Sbjct 10682435 AAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTG 10682376 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| ||| ||||| ||||| ||||| || ||| |||||||| |||| || || Sbjct 10682375 AATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTT 10682316 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || || || | ||||| Sbjct 10682315 ACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682286 Score = 163 bits (180), Expect = 6e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| || || ||||| ||||| || || | ||||||||| |||||||| || || Sbjct 10681804 TGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCAAGTTGT 10681745 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | || ||||| ||||||||||| ||||||||||||||||| ||| Sbjct 10681744 TTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTT 10681685 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || ||||| ||||| ||| || || ||||| || | || || |||||| Sbjct 10681684 GACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTTGCCTGTC 10681625 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||| | |||||| Sbjct 10681624 AAAGTCTTAACGAAAATTTGCAT 10681602 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| |||||||||||||| |||||||| | ||| ||||| ||||| || || ||| Sbjct 10683400 TGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCATCCTCAAGTTGC 10683341 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | || |||||| |||||||| || ||||| || |||||||| ||| Sbjct 10683340 TTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTATCTTGAATCTTT 10683281 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| || ||||| ||||| || ||| |||||||| |||| || || ||||| Sbjct 10683280 GATTTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTTTACCTGTT 10683221 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || || || | ||||| Sbjct 10683220 AAGGTCTTAACAAAAATCTGCAT 10683198 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| || || ||||| ||||| || || | ||||||||| |||||||| || || Sbjct 10682716 TGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCAAGTTGT 10682657 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | || |||||| ||||||||||| ||||||||||||||||| ||| Sbjct 10682656 TTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTT 10682597 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || || |||||||| || ||| || || || || | |||||||| ||| Sbjct 10682596 GATTTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATGGTCTTTCCAGTC 10682537 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||| | ||||| Sbjct 10682536 AAAGTCTTAACGAAAATCTGCAT 10682514 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || ||||| |||||||||||||| || || |||||||||||||||||||| Sbjct 15965449 TACCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGG 15965390 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || || || |||||||| || || || ||||| || | ||||| || || | Sbjct 15965389 CTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAA 15965330 Query 195119 AAGTTTTTACGAACACTTGCATTT 195142 ||| || ||||| | ||||||| Sbjct 15965329 GAGTCTTAACGAAAATCTGCATTT 15965306 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || ||||| |||||||||||||| || || |||||||| || ||||| || Sbjct 14587599 TACCGGCAAATATAAGCCGTTGTTGGTCTGGTGGGATACCTTCTTTTTCATGAATCTTAG 14587540 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || || |||| || || || ||| || ||||| || | || ||||| || | Sbjct 14587539 TTTTAACATTATCAACTGTATCTGAGGCTTCAACCTCAAGAGTTATTGTTTTTCCAGTTA 14587480 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 ||||||| || || | ||||||| Sbjct 14587479 AAGTTTTAACAAAAATTTGCATT 14587457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109479680943545