Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq2 181 2e-40
>seq2
Length=16759152
Score = 181 bits (200), Expect = 2e-40
Identities = 162/203 (80%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|||||||| || |||||||| |||||||| || | |||||||| |||||||| || ||
Sbjct 10682260 TGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGT 10682201
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || ||||| | || |||||| ||||| ||||| ||||| || ||||||||||||
Sbjct 10682200 TTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCTTGAATTTTT 10682141
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||||| || ||||||||||| || ||| |||||||| |||| |||||||||||
Sbjct 10682140 GATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTT 10682081
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
||||| || || || | ||||||
Sbjct 10682080 AAAGTCTTGACAAAAATTTGCAT 10682058
Score = 176 bits (194), Expect = 1e-38
Identities = 165/210 (79%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | ||||||||| ||||||||||| ||||||||||| | |||||||| ||||||||
Sbjct 10682951 AACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTC 10682892
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| || || || || || || | || |||||||||||||||||| ||||| || |||||
Sbjct 10682891 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTG 10682832
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|| ||| ||||| || ||||||||||| ||| ||| |||||||| |||| || ||
Sbjct 10682831 GATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGTTTT 10682772
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| || || || || || | |||||
Sbjct 10682771 ACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742
Score = 172 bits (190), Expect = 1e-37
Identities = 164/210 (78%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | ||||||||| |||||||||||||| |||||||| | |||||| || ||||||||
Sbjct 10682039 AACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTC 10681980
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| || || || || || || | || ||||||||||||||| || ||||| || |||||
Sbjct 10681979 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTG 10681920
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||||||| |||||||| || || ||||| || ||| |||||||| |||| || ||
Sbjct 10681919 AATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTT 10681860
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| || || || || || | |||||
Sbjct 10681859 ACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830
Score = 172 bits (190), Expect = 1e-37
Identities = 160/203 (79%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|||||||| || || ||||| ||||| || || | ||||||||| |||||||| || ||
Sbjct 10683172 TGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCAAGTTGT 10683113
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || ||||| | || |||||| ||||||||||| ||||| ||||||||||| |||
Sbjct 10683112 TTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATCTTT 10683053
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| || || || |||||||| || ||| |||||||| |||| |||||||||||
Sbjct 10683052 GATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTT 10682993
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
||||| || || || | ||||||
Sbjct 10682992 AAAGTCTTGACAAAAATTTGCAT 10682970
Score = 167 bits (184), Expect = 5e-36
Identities = 163/210 (78%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | ||||||||| ||||| ||||| |||||||| || | |||||||| ||||||||
Sbjct 10682495 AACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTC 10682436
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| || || || || ||||| | || |||||| ||||||||||| ||||| || |||||
Sbjct 10682435 AAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTG 10682376
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| ||| ||| ||||| ||||| ||||| || ||| |||||||| |||| || ||
Sbjct 10682375 AATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTT 10682316
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| || || || || || | |||||
Sbjct 10682315 ACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682286
Score = 163 bits (180), Expect = 6e-35
Identities = 158/203 (78%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| ||||| || || ||||| ||||| || || | ||||||||| |||||||| || ||
Sbjct 10681804 TGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCAAGTTGT 10681745
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || || || | || ||||| ||||||||||| ||||||||||||||||| |||
Sbjct 10681744 TTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTT 10681685
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|||||| || ||||| ||||| ||| || || ||||| || | || || ||||||
Sbjct 10681684 GACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTTGCCTGTC 10681625
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
||||| || ||||| | ||||||
Sbjct 10681624 AAAGTCTTAACGAAAATTTGCAT 10681602
Score = 159 bits (176), Expect = 8e-34
Identities = 157/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|||||||| |||||||||||||| |||||||| | ||| ||||| ||||| || || |||
Sbjct 10683400 TGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCATCCTCAAGTTGC 10683341
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || || || | || |||||| |||||||| || ||||| || |||||||| |||
Sbjct 10683340 TTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTATCTTGAATCTTT 10683281
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||||| || ||||| ||||| || ||| |||||||| |||| || || |||||
Sbjct 10683280 GATTTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTTTACCTGTT 10683221
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
|| || || || || | |||||
Sbjct 10683220 AAGGTCTTAACAAAAATCTGCAT 10683198
Score = 154 bits (170), Expect = 3e-32
Identities = 156/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| ||||| || || ||||| ||||| || || | ||||||||| |||||||| || ||
Sbjct 10682716 TGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCAAGTTGT 10682657
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || || || | || |||||| ||||||||||| ||||||||||||||||| |||
Sbjct 10682656 TTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTT 10682597
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| || || || |||||||| || ||| || || || || | |||||||| |||
Sbjct 10682596 GATTTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATGGTCTTTCCAGTC 10682537
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
||||| || ||||| | |||||
Sbjct 10682536 AAAGTCTTAACGAAAATCTGCAT 10682514
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| || || ||||| |||||||||||||| || || ||||||||||||||||||||
Sbjct 15965449 TACCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGG 15965390
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|| || || || |||||||| || || || ||||| || | ||||| || || |
Sbjct 15965389 CTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAA 15965330
Query 195119 AAGTTTTTACGAACACTTGCATTT 195142
||| || ||||| | |||||||
Sbjct 15965329 GAGTCTTAACGAAAATCTGCATTT 15965306
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| || || ||||| |||||||||||||| || || |||||||| || ||||| ||
Sbjct 14587599 TACCGGCAAATATAAGCCGTTGTTGGTCTGGTGGGATACCTTCTTTTTCATGAATCTTAG 14587540
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|| || || |||| || || || ||| || ||||| || | || ||||| || |
Sbjct 14587539 TTTTAACATTATCAACTGTATCTGAGGCTTCAACCTCAAGAGTTATTGTTTTTCCAGTTA 14587480
Query 195119 AAGTTTTTACGAACACTTGCATT 195141
||||||| || || | |||||||
Sbjct 14587479 AAGTTTTAACAAAAATTTGCATT 14587457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109479680943545
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