Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 6e-16 >seq2 Length=16759152 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| || ||||| |||||||| || || ||||| ||| | |||| || Sbjct 10683407 AACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCATCCTC 10683348 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || ||||||||||| |||| || ||| || ||| | || | || ||||| || Sbjct 10683347 AAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTATCTTG 10683288 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 |||||| |||||| || |||| || ||| | ||||| || | || |||| Sbjct 10683287 AATCTTTGATTTGAC--AT--TATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATGG 10683232 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || || | ||||| ||||| ||||||||| Sbjct 10683231 TTTTACCTGTTAAGGTCTTAACAAAAATCTGCATA 10683197 Score = 84.2 bits (92), Expect = 1e-11 Identities = 149/215 (69%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| || ||| || || || |||||||| ||||| ||| | |||| || Sbjct 10683179 AACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTC 10683120 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || |||||||||||||| || | || ||| || ||| | || | || |||||||| Sbjct 10683119 AAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTG 10683060 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 |||||| ||| || || | ||||| || | || || || | || || | Sbjct 10683059 AATCTTTGATTTAAC--AT--TGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATAG 10683004 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || | |||||| ||||| || |||||| Sbjct 10683003 TCTTTCCTGTTAAAGTCTTGACAAAAATTTGCATA 10682969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633065876280