Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_015780.1
Length=205791
Score E
Sequences producing significant alignments: (Bits) Value
seq2 84.2 3e-11
>seq2
Length=16759152
Score = 84.2 bits (92), Expect = 3e-11
Identities = 168/243 (69%), Gaps = 12/243 (5%)
Strand=Plus/Minus
Query 126945 ATTTTTATAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATGCAT 127004
|||| | | || |||| || ||||| | |||||||||||| ||||| ||||||
Sbjct 5488677 ATTTATTTTGGACCAATTTATTATCAAAAGTTAAAACATATGGTTTTGGATAAGATGCAT 5488618
Query 127005 GCTAGAAGTCATG--GTCAAGTAACAACATT-ACATCGTCAACCAAACTGTGGTCGTTCC 127061
|||||| ||| | | | ||| | ||| ||| |||||||||| ||| | |
Sbjct 5488617 GCTAGA--TCAAGAGGACCAGTTGCCGTATTGACA-CGTCAACCAACAGAGGGTAGAGCT 5488561
Query 127062 CAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGGAGCC 127121
| | |||||| |||||||| ||||||||||||| ||||||| || | | |||||||
Sbjct 5488560 CGTGATGGTGGTTTAAGATTAGGAGAAATGGAAAGAGATTGTCTTATAGCATATGGAGCA 5488501
Query 127122 ACACAATTTTTAAATGAAAG---AATGTTTTTATGTTCAGATCCTTTTCAAATTGATGTG 127178
|| | |||| ||| | |||| || | ||| |||| |||||| |||||||
Sbjct 5488500 TCAATGCTATTAATGGAACGGTTAATGGTT---TCTTCTGATCAATTTCAAGTTGATGTA 5488444
Query 127179 TGT 127181
|||
Sbjct 5488443 TGT 5488441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658402088944600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |