Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq2 84.2 3e-11 >seq2 Length=16759152 Score = 84.2 bits (92), Expect = 3e-11 Identities = 168/243 (69%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 126945 ATTTTTATAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATGCAT 127004 |||| | | || |||| || ||||| | |||||||||||| ||||| |||||| Sbjct 5488677 ATTTATTTTGGACCAATTTATTATCAAAAGTTAAAACATATGGTTTTGGATAAGATGCAT 5488618 Query 127005 GCTAGAAGTCATG--GTCAAGTAACAACATT-ACATCGTCAACCAAACTGTGGTCGTTCC 127061 |||||| ||| | | | ||| | ||| ||| |||||||||| ||| | | Sbjct 5488617 GCTAGA--TCAAGAGGACCAGTTGCCGTATTGACA-CGTCAACCAACAGAGGGTAGAGCT 5488561 Query 127062 CAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGGAGCC 127121 | | |||||| |||||||| ||||||||||||| ||||||| || | | ||||||| Sbjct 5488560 CGTGATGGTGGTTTAAGATTAGGAGAAATGGAAAGAGATTGTCTTATAGCATATGGAGCA 5488501 Query 127122 ACACAATTTTTAAATGAAAG---AATGTTTTTATGTTCAGATCCTTTTCAAATTGATGTG 127178 || | |||| ||| | |||| || | ||| |||| |||||| ||||||| Sbjct 5488500 TCAATGCTATTAATGGAACGGTTAATGGTT---TCTTCTGATCAATTTCAAGTTGATGTA 5488444 Query 127179 TGT 127181 ||| Sbjct 5488443 TGT 5488441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658402088944600