Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 847 0.0 seq1 747 0.0 >seq2 Length=16759152 Score = 847 bits (938), Expect = 0.0 Identities = 1326/1897 (70%), Gaps = 62/1897 (3%) Strand=Plus/Minus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || ||| |||| || | | ||| |||| ||| |||| |||||||||||| || Sbjct 8586505 TTTATCAACACTAAATTTTACAGCATTTGAAGCTGGTTTAGTTCTTAAATAATACATTCC 8586446 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 || ||||| || |||||||||| |||||||| | | || || |||| | || Sbjct 8586445 CGTTTTTAAGCCACGTTTCCATCCATAAAAATGCATTGAACTACATATACCATAAGTTGG 8586386 Query 47093 TT--CTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCT 47150 || || | ||| || | |||| |||||| ||||||||||| | || | |||||| Sbjct 8586385 TTTACTTAGATA--AAGACTAAGTGATTGAGATTGATCAATAAAAGGCCCCCGATCAGCA 8586328 Query 47151 GCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210 ||||| | | ||| | |||||| || |||||||| |||||||||| || || ||| Sbjct 8586327 GCCATTCCAATAATGTCTTTTTGTGAAATTTCCCATACAGTTTTATAAAGTTCTTGGATG 8586268 Query 47211 TCTTCTGGGAGATTAG---TATTTTGAATAGATCCTCCgttttctataattttgtttttt 47267 |||| ||| | || || |||||||||| ||||| ||||| || ||||| || | Sbjct 8586267 TCTTTTGGAATATCAGGTATATTTTGAATGGATCCATTATTTTCAATTATTTTATTGAGT 8586208 Query 47268 aat---tcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACA 47324 ||| ||||| ||||| || | | |||| || |||||||| ||| ||| Sbjct 8586207 AATCCTTCATT---CCAAATATTAAGAGAAATTAAATCACGTAGAAGATGAGTATTTACA 8586151 Query 47325 ATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATA 47384 | |||||| |||||||||| |||| | ||||||||||| ||||||||||| ||| Sbjct 8586150 ACTTGAAAATCTCCAGATAAAACTCGCCTTGTATATATATTAGAAGTATATGGTTCAATA 8586091 Query 47385 GATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAG 47444 |||||||| ||||||| |||||||| || |||||||||||||| | |||| |||||| Sbjct 8586090 GATTCATTGTTTCCAAGAATTTGAGATGTAGATGCTGTAGGCATTGGAGCAATTAATAAT 8586031 Query 47445 CTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCT 47504 ||| | | ||| | | || | | ||| ||||| | ||| Sbjct 8586030 GAATTGCGAAGACCAAAACGTATAATTTCTTGCTTTAAAATATCCCATTCCCATAAATCA 8585971 Query 47505 GATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTA 47564 ||||| ||||||||| | |||||| |||||||||||||| | |||||| | || Sbjct 8585970 CTTGGAATAACATTCCACATATCATACTGAAGAATTCCTTTGGATGCTGGAGAATCTTTG 8585911 Query 47565 TATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAA 47624 |||||| |||| || || || | | |||||| ||||| | ||||| || | Sbjct 8585910 AATGTTTCATAACATCCATACTTCTTTGACAATTCACAGGAAGCTTCAAGTGCACCATGA 8585851 Query 47625 TATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATAN 47684 || || |||||||| |||||||| || |||| | ||||||| |||| |||||||| Sbjct 8585850 TAAATAGTTTCAAAAATTTTTATATTAAGATCTTTAGCTTCTGGTGATGTGAAAGGATAC 8585791 Query 47685 NNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTT 47744 |||||||| || | ||||||||||||||| |||||||| | ||| | Sbjct 8585790 CTCATAAGCAAAAATGTATCAGCAAGTCCTTGAACACCAATTCCAATTGGACGATGCTTA 8585731 Query 47745 TTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGA 47804 ||| || || ||||||| || |||||| || ||||| ||||||||||||| | Sbjct 8585730 AGATTTGATAAACGAGCTTCTTCTAGTGGATAAAAATTAATATCAATAATTTTATTTAAA 8585671 Query 47805 NNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTAT---------TAAAATCAAACTT- 47854 ||||||| | | | | || |||| ||||| | Sbjct 8585670 TTTCTTGTT---------ACAATTTTTGTCACATCATGAAGCATTTTAAAGTCAAATGTA 8585620 Query 47855 -GTTATTTAT----------AACAAACCTATTAAGTGCTATAGATGCTAGATTACATACA 47903 ||| ||| | ||||||| |||||||||| || ||||||| |||||| ||| Sbjct 8585619 GGTTTTTTTTCTTTTATAACAACAAACATATTAAGTGCAATTGATGCTAAATTACAAACA 8585560 Query 47904 GCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATA 47963 || || || ||||| | |||||| || ||||||| ||||||||| |||| | || Sbjct 8585559 GCAACTTCGCTTGGAGAACAATATTGAATAATTTCAGTACATAGATTTGAACATCTAATC 8585500 Query 47964 GTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGT 48023 || || |||||||| |||||| | ||||| || || |||| |||| | || Sbjct 8585499 GTTCCTAAATTTTGTTGATTACTTTTACGATTACAATGATCTTTATAAACCATATATGGA 8585440 Query 48024 GTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACA 48083 | |||||||| |||||||||||| || | ||||||| ||||| ||||| Sbjct 8585439 ATACCAGTTTCAATCTGAGATTCACAAATTTTCTGCCAAACAAATCTAGCTTTTATTT-- 8585382 Query 48084 GCTCTAG---CTTTATTATCATGTTCGTATTTAGTATATAACTTC-TCAAATTCATCCCC 48139 ||| | | | || || |||| ||| |||||| |||| || ||| ||||||| ||| || Sbjct 8585381 GCTTTCGGAACCTTTTT-TCATTTTCATATTTAATATA-AAGTTCATCAAATTTATCACC 8585324 Query 48140 ATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATT 48199 | | |||||| | || |||||||||| ||||||||| |||||||||| ||| | Sbjct 8585323 AAAACAATTATCAAGACCTGGACATTCATAAGGACACATTAATGACCAATGAAGATCCTG 8585264 Query 48200 TTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCT 48259 || || | ||||||||| |||||| | |||||| | ||||||||| | || ||| Sbjct 8585263 TTCAACACGTTTCATAAATAAATCTGGAACCCAAAGTCCATAAAATAAATCACGAGCTCT 8585204 Query 48260 TAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCA 48319 | |||||| || | || || | | || | ||| |||||||||||||||||||| Sbjct 8585203 TGCTTCTTCTGGACCTGTGTTTTTTCTTAAATCTAAAAATTCCATTATATCAGCATGCCA 8585144 Query 48320 TGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCT 48379 |||||| || || ||||| | | | || |||||||||||||| || ||||| | ||| | Sbjct 8585143 TGGTTCCAAGTAGATTGCAAATGCCCCAGGTCGTTTATTACCACCCTGATCAACATAACG 8585084 Query 48380 GGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCC 48439 |||||| | |||||||| | ||||||||| | | |||||||||| ||||| ||||| Sbjct 8585083 AGCAGTACTATTATAAACACGTAACATTGGTATTAAACCATTTGATGATCCATTTGTTCC 8585024 Query 48440 CGAAATATAACTTCCACTAGCTCTTATATTAC---TAATTGAAATACCTATACCACCTGC 48496 | |||| | ||||| ||| | || | || || ||| || || || || || Sbjct 8585023 TGCAATAAATGTTCCAGAAGCACGAATTCCAGAGATACTT--AAT-CCAATTCCTCCGGC 8584967 Query 48497 CATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATC 48556 ||| || |||| |||||| |||| | || |||||||||||||| ||| |||||| Sbjct 8584966 AGATTTTGAAATTATAGCACATTGTTTCAAAGTGTCATAAATTCCTTCAATAGAATCATC 8584907 Query 48557 TATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAA 48616 ||| |||||| |||||| || | ||| | | || ||||||||| ||||||||| Sbjct 8584906 AGCCATTGTTAATAAAAAACATGACGATAATTGTGCACGAGAAGTTCCTGCATTAAATAA 8584847 Query 48617 TGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGA 48676 |||||| || ||||||||||||||||| | || | || |||||| |||||| |||| Sbjct 8584846 TGTTGGGGAAGCATGAATAAACCATTTTTTAGACATATATAAATATGTCTCAATAGCAGA 8584787 Query 48677 ATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 | | ||||| | ||| || |||||| ||| |||||||||||||||||||||||||| Sbjct 8584786 AGCAATATCTTCTCTATGAATTGCTATAGCTACTCGCATTAACATATATTGAGGTCTTTC 8584727 Query 48737 AACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATA 48796 |||||||| | ||| ||| | || | ||||||| ||| | |||| |||| |||||||| Sbjct 8584726 CACAATTTTATCATTGATTCTTAATAAATATGATCGTTCTAGTGTTCTAAATCCAAAATA 8584667 Query 48797 -GTTGTATGAAAAGTCGTTATCATT---AATAATTGA 48829 || || |||| || || ||||| ||||| ||| Sbjct 8584666 TGTAAAATTAAAA-TCTTTTTCATTTTCAATAACTGA 8584631 Score = 356 bits (394), Expect = 3e-93 Identities = 563/801 (70%), Gaps = 12/801 (1%) Strand=Plus/Minus Query 18613 TAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTACTCCCATTTTT 18672 || ||||| ||||||| | |||| | ||||||| | | ||| || || | ||| Sbjct 14764796 TAGAAATCGGCATCCAATGTAAAAACACGTTCTTCATCTGTAGACATAACACCGAATTTC 14764737 Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 |||||||| | |||| |||| ||||||||||| ||||||||||| | ||| ||| || Sbjct 14764736 TGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAATATTAACC 14764677 Query 18733 ATAAAATCAAATGGATTTTTTACATTATATAtttttttG-AATCCTAA-TTCTAATAGTA 18790 ||||||||||| || || || |||||||| | |||| ||| ||| ||| | | | Sbjct 14764676 ATAAAATCAAAGGGGTTCTTAACATTATAAAGTTTTGAACAAT--TAAGTTCCACCAACA 14764619 Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATT 18850 || |||||| ||| ||||||||| ||| | | | |||||||| || | | Sbjct 14764618 AATGGTCAGCTACATATTCAATATATGTACACATTAAACGTGAGTTCATTCCAATCATAT 14764559 Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAG 18910 |||||| || ||||||||||| |||| | ||| |||| ||||| | | ||||| Sbjct 14764558 CAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCAACTGCATTTTTAATAATTT 14764499 Query 18911 ATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAAT 18970 | | | |||||| || || | ||| | ||||||| | || || |||| Sbjct 14764498 CTTTTATACGTTCTTCAGATGGTTTGTTTTCAAGGTAACTAAACATAAGGCAGGCGAAAT 14764439 Query 18971 CACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCA 19030 ||| |||| |||||| ||||| ||||||||||| ||| ||| || || ||||||| Sbjct 14764438 CACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGAATGTGTCAATCCTGGCATCA 14764379 Query 19031 GTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTA 19090 || | ||| || | ||| ||||| ||||||||||| ||||||||||| |||||||| | Sbjct 14764378 AACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAAGAAGATACCTTCAA 14764319 Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCA 19150 | ||||||||||||| | || ||||||| || |||||| |||| | |||||| | | Sbjct 14764318 CAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATTCTTATCAGCGATCCATCTTA 14764259 Query 19151 GTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACA 19210 ||||||||||| || ||| | | | |||| | |||| || |||||| || | || Sbjct 14764258 AAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTAAAGCATTAAAAAGTTTCA 14764199 Query 19211 TACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACT----GTACATTTCTGAA 19266 | | || || || | | || ||| | | || |||| | ||||| || Sbjct 14764198 TTCTTTCGTC---AT-TGTCACGTATATAGGTTTCGATAAGTTTTGAATACATCTCACTG 14764143 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 ||||||||||| || || || || || || || || | | ||| || | || || ||| Sbjct 14764142 TGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCTCGGGAATTTGAACT 14764083 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 || || ||||||| ||||||||||| |||||||| || |||||| ||| ||||| || Sbjct 14764082 TCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAGAAGCGGCAAAGAAA 14764023 Query 19387 GCTAATACATGTTTAATAAAA 19407 ||||| ||| || ||||||| Sbjct 14764022 GCTAAGACACGTGAAATAAAA 14764002 >seq1 Length=11693564 Score = 747 bits (828), Expect = 0.0 Identities = 1461/2159 (68%), Gaps = 64/2159 (3%) Strand=Plus/Plus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || ||| |||| |||| | || | || | |||||||| ||| |||||||| || Sbjct 6013143 TTTATCAACACTAAATTTAACAGCATCAGCAGCAGGTTTTGTTCTTAAGTAATACATTCC 6013202 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 ||| ||||| || |||| | || |||||||| | | | | | ||| || Sbjct 6013203 AGTTTTTAATCCACGTTTCCAACTATGAAAATGCATTGAACTACAAATGGCATATGATGG 6013262 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 || | || ||||| |||||| ||||| ||||| ||||| ||||| | |||||| || Sbjct 6013263 TTTAGCAACATGAAGATTAAGCGATTGTGATTGATCTATAAAAGCACCACGATCAGCAGC 6013322 Query 47153 CATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212 ||| || | ||| | |||| | ||| ||||| || |||||||||| || |||||| | Sbjct 6013323 CATCTCAATTATATCTTTTTGAGATATTTCCCAAACAGTTTTATAAAGTTCTTTAATATT 6013382 Query 47213 TTCTGGGAGAT---TAGTATTTTGAATAGATCCTCCgttttctataattttgttttttaa 47269 ||| | | || ||||||| |||||||| || |||| || | || |||| Sbjct 6013383 AGGTGGAATTTCTTTAATATTTTGGATAGATCCATTATTAGCTATTATCTCATTCATTAA 6013442 Query 47270 ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329 || | ||| | || | ||| |||| ||| | |||||||||||| |||||||| Sbjct 6013443 CTCTTCACTCCATATGTTAAGATCAATTAAATCTTTAAGAAGATGAGGATTGACAATTTG 6013502 Query 47330 AAATTCTCCAGATAGTACTCTACGGCTA---TATATATTACTTGTATATGGTTCTATAGA 47386 || ||||| || || || ||| ||| || || ||| ||||||||||| ||||| Sbjct 6013503 GAAATCTCCTGAAAGAAC---ACGTCTAGTGTAAATGTTAGAAGTATATGGTTCAATAGA 6013559 Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446 |||||||||||| | ||| || |||||||| || || ||||| | |||| |||||| Sbjct 6013560 TTCATTATTTCCTAGAATCTGTGCAGTTGAAGCAGTTGGCATTGGAGCAAGTAATAAAGA 6013619 Query 47447 ATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGA 47506 ||||||||| |||| |||| || | || ||||||||| | ||| Sbjct 6013620 ATTTCTTACACCATGTTTTGCAATGTCTGCTTTTAAAGTTTCCCAATCCCATAAATCACT 6013679 Query 47507 TGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATA 47566 ||| |||||||| | |||||||||||||| ||||| || ||||| |||| ||| Sbjct 6013680 TGGTTTGACATTCCACATGTCATATTGAAGAATACCTTTTGATACTGGAGATCCATCATA 6013739 Query 47567 TGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATA 47626 ||| | ||||||||| | ||| ||| | |||||| ||||||||||| | || || Sbjct 6013740 TGTCTCATAAGGACCATCACGTTCAGCTACTTCACATGAAGCTTCCAATGCTCCATGGTA 6013799 Query 47627 TATTGTTTCAAATATTTTTATGTTTAGATTCCTT-GCTTCTGATGATTCAAAAGGATANN 47685 ||||||||||| || | || || ||| || || | | ||| |||||||| Sbjct 6013800 AATTGTTTCAAAAATCAACTTATTAAG-TTCTTTAGCGGCAGGTGAAGTGAAAGGATAAC 6013858 Query 47686 NNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTT 47745 |||| ||| || || || |||||||||||||||||||| | || | Sbjct 6013859 GCATAAGCATAAATGCATCAGCTAAACCCTGAACACCAATACCAATTGGACGGTGTCTCA 6013918 Query 47746 TATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGAN 47805 |||| || ||||| || | ||||| | || | ||| ||||||||||| | | Sbjct 6013919 TATTTGATTTTCTGGCTTCAGGGACAGGATAATAATTGACATCAATAATTTTATTCAAAT 6013978 Query 47806 NNNNNNNNNNNNNNNNN---ACAATTTCTCTTAATTT---ATTAAAATCAAACTTGTTAT 47859 |||| | | ||| ||||||| || || || Sbjct 6013979 TTTTAGTTAGAATTTTAGAAACAACATGAAGTTGTTTGAAATTAAAAGCAGGTTTACCAT 6014038 Query 47860 TTATAAC------AAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT 47913 || ||| ||| |||||||| || |||||| |||||||||||||||| || |||| Sbjct 6014039 CTACAACTTCAACAAATCTATTAAGAGCAATAGATCCTAGATTACATACAGCAACTTCAT 6014098 Query 47914 TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAAT 47973 ||| | ||||| | ||||||| ||||| ||| |||||| || || || | || Sbjct 6014099 CTGGTGCACAATATTCAACAATTTCAGTACATAAATTTGAACATTTAATGGTTCCAAGAT 6014158 Query 47974 TTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTT 48033 |||| |||||| | ||||| || ||||||| |||| |||||||||| |||| Sbjct 6014159 TTTGTTGATTACTTTTACGATTACAATGATCTTTGTAAACCATATAAGGTGTTCCGGTTT 6014218 Query 48034 CTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCT--AGC 48091 | || ||| |||| || || ||||| | || |||||||| ||| | | Sbjct 6014219 CAATTTGACTTTCACAAATCTTTTGCCAAATAACTCTGGCCTTTATTTGTTTTCTGTAAC 6014278 Query 48092 TTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATC 48151 || | |||| ||| || || |||||| | |||||| | || || | || || Sbjct 6014279 GTT--TCTCATTTTCATACTTGTGATATAATTCCTCAAAAGCCTCACCCCAAGTATCCTC 6014336 Query 48152 TAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGT 48211 | ||||||||||| | || |||||||| ||||||| || || | ||| | | Sbjct 6014337 AAGTCCAGGACATTCGTGGGGGCACATCAAAGACCAATAAGAGTCTTTCTCTACACGTTT 6014396 Query 48212 CATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATT 48271 |||||||| ||| || ||||||||| | ||||||||| | || |||| ||||||| Sbjct 6014397 CATAAATAAATCAGGAATCCAAAGACCATAAAATAAATCACGAGCTCTTTCTTCTTCAGG 6014456 Query 48272 GCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 ||| |||| | ||||| || | ||| || | || ||||||||||||||||||| ||| Sbjct 6014457 GCCTGTATTTTTCTTAAGATCCAAAAATTCTAAAATGTCAGCATGCCATGGTTCTAGATA 6014516 Query 48332 TATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTT 48391 ||| || | | | || |||| |||||| || ||||| || | ||| | || |||||||| Sbjct 6014517 TATAGCAAATGCTCCAGGTCTTTTATTTCCCCCTTGGTCAACATAGCGTGCTGTATTGTT 6014576 Query 48392 ATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACT 48451 | ||||||| |||||||| | | ||||| ||| ||||||| || || |||| || Sbjct 6014577 AAAAACTCTCAACATTGGTATTAATCCATTAGATGTACCATTTGTACCACCAATAAAAGA 6014636 Query 48452 TCCACTAGCTCTTATATTACTAAT-TGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 ||| |||| | ||| | || | ||| || ||||| || || ||| || |||| Sbjct 6014637 ACCATTAGCACGAATACAATGAACATTCAAT-CCAATACCGCCAGCAGATTTTGAAATTA 6014695 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 ||||| ||||||| |||||||| || ||||| || |||||| ||| ||| || Sbjct 6014696 ATGCACATTGTTTAAGAGTATCATATATACCTTCAATTGAATCATCAGACATTGTTAGTA 6014755 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 ||||| ||||| || ||| | | ||||||| |||||||||||||||||| |||| Sbjct 6014756 AGAAACACGAAGACAGCTGTGGACGTCTGGTTCCTGCATTAAATAATGTTGGAGAGGCAT 6014815 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 || ||||||| |||| || | | | |||||||||||||||||||| ||||| Sbjct 6014816 GAGTAAACCACTTCTGAGACATATAGTCATATGTTTCAATAACAGAATTAATATCATCCC 6014875 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTAT 48750 ||| || || | | ||||||||||| | || ||| ||||||||| ||| ||| || Sbjct 6014876 CATGAATTCCAACTGCCACACGCATTAATAAATGTTGTGGTCTTTCAGCAACTTTCCCAT 6014935 Query 48751 TTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGT 48810 ||||||| || |||||||| ||| | ||| ||||| |||||||| | | ||| | Sbjct 6014936 TTATTTTTAATAGATATGAACGTTCAAGTGTCTTAAATCCAAAATAAGAGAAATCAAAAT 6014995 Query 48811 CGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTTAT--ATACT------AC 48862 | | | || || || | ||||| | | | || |||||| | || | | Sbjct 6014996 CTCTGTTATAAACGATAGCAGAATTAAGTTTATCAGCATGTTTTTTGATGATGTTGTGAG 6015055 Query 48863 ATCCATTACAT-TTTTTGATATAATTGATTCCTTGTAAAGA--------TCTTCTACAA- 48912 | | | || | | ||| | ||| | |||| || ||| || || || Sbjct 6015056 TTTCCTCACTTATCATTGGCA-AATGTACTCCTGTTACAGAATGACGATAGTTATATAAG 6015114 Query 48913 -----CATCACT-----AAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATT 48962 ||| || ||| |||| ||||||| |||||| | |||||| | || ||| Sbjct 6015115 TCACTCATAGCTTCTGAAAAACTTTTCTTTGTTTGTTTATGCATATTAGAAACAGCAATT 6015174 Query 48963 CTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTACT---AGATATTTCT 49019 || ||||||| |||||||||||||||||||||||| || || |||| ||| | ||| Sbjct 6015175 CTTGCAGCTAGTATAGCATAATCTGGATGAATTGTCGT-CA--TACTTGCAGAAACTTCA 6015231 Query 49020 GCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTT 49078 || ||||| |||||||||| || | |||||| |||| | |||||| |||||||| Sbjct 6015232 GCAGCTAAATTATCTAATTCAACTGTTGATACACCATTATACAATCCTTGGATAACTTT 6015290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107851441400