Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 260 2e-64 seq1 143 3e-29 >seq2 Length=16759152 Score = 260 bits (288), Expect = 2e-64 Identities = 503/739 (68%), Gaps = 5/739 (1%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 |||||| || | ||| |||||||| |||| | | || || |||||||| ||||| || Sbjct 14764752 CATAACACCGAATTTCTGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCCTC 14764693 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 | ||| ||||| ||||||||||||| || || |||||| | | ||| Sbjct 14764692 AATTGAAATATTAACCATAAAATCAAAGGGGTTCTTAACATTATAAAGTTTTGAACAATT 14764633 Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTT 37051 | |||| || | || || ||| |||| || ||| ||||||||| |||| Sbjct 14764632 AAGTTCCACCAACAAATGGTCAGCTACATATTCAATATATGTACACATTAAACGTGAGTT 14764573 Query 37052 TATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGC 37111 || ||||| | | || |||| |||||| ||| || ||||| || || || Sbjct 14764572 CATTCCAATCATATCAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCAACTGC 14764513 Query 37112 ATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAA--TATTTAAAC 37169 || ||||| || | ||| |||||||| ||| | |||| || || ||||| Sbjct 14764512 ATTTTTAATAATTTCTTTTATACGTTCTTCAGATGGTT--TGTTTTCAAGGTAACTAAAC 14764455 Query 37170 AATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAG 37229 | | || || ||||||| ||||| || |||||||| ||||||||||| ||| Sbjct 14764454 ATAAGGCAGGCGAAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGAATGT 14764395 Query 37230 GTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAA 37289 || ||||||||||| ||||| | ||| || | ||||||||| | ||||| || |||||| Sbjct 14764394 GTCAATCCTGGCATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAA 14764335 Query 37290 AAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAA 37349 ||||| ||||||||||| |||||||| || | || ||| || ||||| | | | | | Sbjct 14764334 AAGAAGATACCTTCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATTCTTA 14764275 Query 37350 TCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATT 37409 |||| |||||| || | |||||| || ||| | | | | || || || | Sbjct 14764274 TCAGCGATCCATCTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTAAA 14764215 Query 37410 GCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTA 37469 || || || || || |||| ||| | || |||||| || || || ||| | Sbjct 14764214 GCATTAAAAAGTTTCATTCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGTTTTGAA 14764155 Query 37470 TACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCA 37529 ||||| ||| |||||||||||| || || || || |||||||| || | | || || Sbjct 14764154 TACATCTCACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCTCG 14764095 Query 37530 GATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTA 37589 | | |||||| || ||| |||| |||| | || || |||||||| || |||||| | Sbjct 14764094 GGAATTTGAACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAGAA 14764035 Query 37590 GCTGCAAAGAAAGC-AAGA 37607 || ||||||||||| |||| Sbjct 14764034 GCGGCAAAGAAAGCTAAGA 14764016 >seq1 Length=11693564 Score = 143 bits (158), Expect = 3e-29 Identities = 129/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 153288 GGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCT 153347 |||||||||||||||||||||||||| |||||| | |||||| | ||||| || ||||| Sbjct 581596 GGTGTTTTACATACAAAATTTTGGATTGTTGATCAAAAACATATTTATATTGGTAGTGCA 581537 Query 153348 AATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAAT 153407 ||||||||||||| |||| ||||| |||| ||||| | ||| || ||| | ||| | Sbjct 581536 AATATGGATTGGAAATCATTAACTGAAGTTAAAGAGATGGGTGTATTAATAGAAAATTGT 581477 Query 153408 TCTTGTATAGCTAATGAACTAACTAAAATATTTAACATATAT 153449 |||||| |||| |||| || ||||||||||| | | ||| Sbjct 581476 TCTTGTTTAGCACATGATTTACATAAAATATTTATCGTTTAT 581435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592315800465400