Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq2 260 2e-64
seq1 143 3e-29
>seq2
Length=16759152
Score = 260 bits (288), Expect = 2e-64
Identities = 503/739 (68%), Gaps = 5/739 (1%)
Strand=Plus/Minus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931
|||||| || | ||| |||||||| |||| | | || || |||||||| ||||| ||
Sbjct 14764752 CATAACACCGAATTTCTGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCCTC 14764693
Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991
| ||| ||||| ||||||||||||| || || |||||| | | |||
Sbjct 14764692 AATTGAAATATTAACCATAAAATCAAAGGGGTTCTTAACATTATAAAGTTTTGAACAATT 14764633
Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTT 37051
| |||| || | || || ||| |||| || ||| ||||||||| ||||
Sbjct 14764632 AAGTTCCACCAACAAATGGTCAGCTACATATTCAATATATGTACACATTAAACGTGAGTT 14764573
Query 37052 TATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGC 37111
|| ||||| | | || |||| |||||| ||| || ||||| || || ||
Sbjct 14764572 CATTCCAATCATATCAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCAACTGC 14764513
Query 37112 ATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAA--TATTTAAAC 37169
|| ||||| || | ||| |||||||| ||| | |||| || || |||||
Sbjct 14764512 ATTTTTAATAATTTCTTTTATACGTTCTTCAGATGGTT--TGTTTTCAAGGTAACTAAAC 14764455
Query 37170 AATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAG 37229
| | || || ||||||| ||||| || |||||||| ||||||||||| |||
Sbjct 14764454 ATAAGGCAGGCGAAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGAATGT 14764395
Query 37230 GTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAA 37289
|| ||||||||||| ||||| | ||| || | ||||||||| | ||||| || ||||||
Sbjct 14764394 GTCAATCCTGGCATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAA 14764335
Query 37290 AAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAA 37349
||||| ||||||||||| |||||||| || | || ||| || ||||| | | | | |
Sbjct 14764334 AAGAAGATACCTTCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATTCTTA 14764275
Query 37350 TCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATT 37409
|||| |||||| || | |||||| || ||| | | | | || || || |
Sbjct 14764274 TCAGCGATCCATCTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTAAA 14764215
Query 37410 GCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTA 37469
|| || || || || |||| ||| | || |||||| || || || ||| |
Sbjct 14764214 GCATTAAAAAGTTTCATTCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGTTTTGAA 14764155
Query 37470 TACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCA 37529
||||| ||| |||||||||||| || || || || |||||||| || | | || ||
Sbjct 14764154 TACATCTCACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCTCG 14764095
Query 37530 GATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTA 37589
| | |||||| || ||| |||| |||| | || || |||||||| || |||||| |
Sbjct 14764094 GGAATTTGAACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAGAA 14764035
Query 37590 GCTGCAAAGAAAGC-AAGA 37607
|| ||||||||||| ||||
Sbjct 14764034 GCGGCAAAGAAAGCTAAGA 14764016
>seq1
Length=11693564
Score = 143 bits (158), Expect = 3e-29
Identities = 129/162 (80%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 153288 GGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCT 153347
|||||||||||||||||||||||||| |||||| | |||||| | ||||| || |||||
Sbjct 581596 GGTGTTTTACATACAAAATTTTGGATTGTTGATCAAAAACATATTTATATTGGTAGTGCA 581537
Query 153348 AATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAAT 153407
||||||||||||| |||| ||||| |||| ||||| | ||| || ||| | ||| |
Sbjct 581536 AATATGGATTGGAAATCATTAACTGAAGTTAAAGAGATGGGTGTATTAATAGAAAATTGT 581477
Query 153408 TCTTGTATAGCTAATGAACTAACTAAAATATTTAACATATAT 153449
|||||| |||| |||| || ||||||||||| | | |||
Sbjct 581476 TCTTGTTTAGCACATGATTTACATAAAATATTTATCGTTTAT 581435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592315800465400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |