Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2 181 8e-41 >seq2 Length=16759152 Score = 181 bits (200), Expect = 8e-41 Identities = 184/240 (77%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| |||||||| |||||||||||||| |||||||| || | | Sbjct 10682284 CCTCCACGAAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAG 10682225 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | ||| || || ||||| ||||| | |||||||| || ||| Sbjct 10682224 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGA 10682165 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||||||||||| ||| ||| | || | ||||| || | ||| ||| Sbjct 10682164 ATTCCTTCCTTATCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACT 10682105 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 |||||||| | || || || |||||||| || ||||| || ||||| | | |||||| Sbjct 10682104 TCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCATACCTCCACGAAGA 10682045 Score = 167 bits (184), Expect = 2e-36 Identities = 181/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | |||||| ||||| || || |||||||| ||||||||||| | | Sbjct 10682968 CCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAG 10682909 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | ||| || || ||||| || || | ||||| || || ||| Sbjct 10682908 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGA 10682849 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||| || ||| ||| ||| | || | |||||||| | ||| ||| Sbjct 10682848 ATTCCTTCCTTATCTTGGATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCAACT 10682789 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 |||||||| | ||||| || ||||| || || ||||| |||||||| | | |||||| Sbjct 10682788 TCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCATACCTCCACGAAGA 10682729 Score = 167 bits (184), Expect = 2e-36 Identities = 181/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| |||||||| || || |||||||| || |||||||| | Sbjct 10683424 CCTCCACGAAGACGGAGAACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAA 10683365 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || | |||||| || ||||| || || | |||||||| || || Sbjct 10683364 AGTGTTCTTCCATCCTCAAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGG 10683305 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||||||| ||| ||| ||| | || | ||||||||| | ||| ||| Sbjct 10683304 ATTCCTTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACT 10683245 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 |||||||| | ||||| || ||||| || || ||||| |||||||| | | |||||| Sbjct 10683244 TCAAGAGTAATGGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCATACCTCCACGAAGA 10683185 Score = 163 bits (180), Expect = 2e-35 Identities = 180/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | |||||| ||||| || || || ||||| |||||||| || | | Sbjct 10682512 CCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAG 10682453 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | ||| || || ||||| || || | |||||||| || ||| Sbjct 10682452 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGA 10682393 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||||||| ||| || || | || | ||||||||| | ||| ||| Sbjct 10682392 ATTCCTTCCTTATCTTGAATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAACT 10682333 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 |||||||| | ||||| || ||||| || || ||||| |||||||| | | |||||| Sbjct 10682332 TCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCATACCTCCACGAAGA 10682273 Score = 158 bits (174), Expect = 1e-33 Identities = 179/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | |||||| ||||| || || |||||||| || |||||||| | Sbjct 10682056 CCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAA 10681997 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| || |||| || | ||| || || ||||| || || | ||||| || || || Sbjct 10681996 AGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGG 10681937 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||||||||||| ||| || | || | ||||||||| | ||| ||| Sbjct 10681936 ATTCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACT 10681877 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 |||||||| | ||||| || ||||| || || ||||| |||||||| | | |||||| Sbjct 10681876 TCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCATACCTCCACGAAGA 10681817 Score = 154 bits (170), Expect = 1e-32 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| |||||||| || ||||| ||||| ||||| || || | Sbjct 10683196 CCTCCACGAAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10683137 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | ||| || || ||||| ||||| | |||||||| || ||| Sbjct 10683136 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 10683077 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || |||||||| ||| ||| ||| | || | ||||| || | ||| ||| Sbjct 10683076 ATTCCTTCCTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACT 10683017 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 |||||||| | || || || |||||||| || ||||| || ||||| | | |||||| Sbjct 10683016 TCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCATACCTCCACGAAGA 10682957 Score = 100 bits (110), Expect = 2e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 101322 ATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAA 101381 ||| | |||| ||||| || | ||| ||||| || || || || |||||||| ||||||| Sbjct 15965455 ATTACATACCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAA 15965396 Query 101382 TTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGC 101441 |||| ||||||| |||| | ||||| || | || || |||||||||| || || | Sbjct 15965395 TTTTGGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTAC 15965336 Query 101442 CGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | ||| || || || |||||||| Sbjct 15965335 CAGTAAGAGTCTTAACGAAAATCTGCAT 15965308 Score = 98.7 bits (108), Expect = 8e-16 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| |||||||| | || ||||| || || || || |||||||| || ||||| || Sbjct 14587599 TACCGGCAAATATAAGCCGTTGTTGGTCTGGTGGGATACCTTCTTTTTCATGAATCTTAG 14587540 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| | || || || || || | ||| || |||||||| | ||||| || |||| Sbjct 14587539 TTTTAACATTATCAACTGTATCTGAGGCTTCAACCTCAAGAGTTATTGTTTTTCCAGTTA 14587480 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||||||| ||||| || ||||| Sbjct 14587479 AAGTTTTAACAAAAATTTGCAT 14587458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396277747998195