Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq2 136 9e-27 >seq2 Length=16759152 Score = 136 bits (150), Expect = 9e-27 Identities = 239/343 (70%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 133895 ATTGATGGATTGAAAAATAATCCTGATTCTCGACGTCATATTCTAACTGCATGGAATGTT 133954 |||||| | | || | |||||| ||| || | |||| || ||||||||||| Sbjct 13736123 ATTGATCAAATAAAGACCAATCCTTTTTCAAGAAGAATTATTTTATCTGCATGGAATCCA 13736064 Query 133955 GGTGAACTAGATAAAATGACTTTGCCACCATGTCATTGCTTTAG-TCAATTCTTCGTAAA 134013 ||| || ||||||||| |||||| ||||||||| |||||| |||||| | || | Sbjct 13736063 TCTGATCTTGATAAAATGGTTTTGCCTCCATGTCATA-CTTTAGCTCAATTTTATGTTCA 13736005 Query 134014 TGACGGTAAGTTATCATGTATTCTATATCAACGTAGCTGTGATCTAT-TCTTAGGAGTAC 134072 || || | ||| || | | ||||||||||| | ||| | |||| || || | Sbjct 13736004 AGATGGAGAATTAAGTTGCCATTTGTATCAACGTAGTGGGGATGTTGGTCTT-GGTGTTC 13735946 Query 134073 CATTCAACATTGCTTCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAG 134132 |||| |||||||||||||| || | ||||||||||| | ||| |||||||||| ||| Sbjct 13735945 CATTTAACATTGCTTCATACTCTCTTTTAACTCATATGATTGCAAAAGTTTGTGGAATAG 13735886 Query 134133 AAGTTGGTGAGTTTGTATGGATGGGTGGAGATGTTCACATTTATAAAAATCACGTAGAAG 134192 ||||| ||||| | |||||||| ||| || || ||||||||| | || | Sbjct 13735885 CTACAGGTGAATTTGTTCACACTATTGGAGATGCTCATATATACAAAAATCACATTGATG 13735826 Query 134193 CAGTTCAGGAACAACTTTCACGTGAACCTAAAGAATTACCAAC 134235 || || | ||| | | ||||||||| | |||| ||||| Sbjct 13735825 CACTTAAACTTCAATTAACTCGTGAACCTTATCAATTTCCAAC 13735783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147588415027230