Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_019401.1
Length=358663
Score E
Sequences producing significant alignments: (Bits) Value
seq2 136 9e-27
>seq2
Length=16759152
Score = 136 bits (150), Expect = 9e-27
Identities = 239/343 (70%), Gaps = 4/343 (1%)
Strand=Plus/Minus
Query 133895 ATTGATGGATTGAAAAATAATCCTGATTCTCGACGTCATATTCTAACTGCATGGAATGTT 133954
|||||| | | || | |||||| ||| || | |||| || |||||||||||
Sbjct 13736123 ATTGATCAAATAAAGACCAATCCTTTTTCAAGAAGAATTATTTTATCTGCATGGAATCCA 13736064
Query 133955 GGTGAACTAGATAAAATGACTTTGCCACCATGTCATTGCTTTAG-TCAATTCTTCGTAAA 134013
||| || ||||||||| |||||| ||||||||| |||||| |||||| | || |
Sbjct 13736063 TCTGATCTTGATAAAATGGTTTTGCCTCCATGTCATA-CTTTAGCTCAATTTTATGTTCA 13736005
Query 134014 TGACGGTAAGTTATCATGTATTCTATATCAACGTAGCTGTGATCTAT-TCTTAGGAGTAC 134072
|| || | ||| || | | ||||||||||| | ||| | |||| || || |
Sbjct 13736004 AGATGGAGAATTAAGTTGCCATTTGTATCAACGTAGTGGGGATGTTGGTCTT-GGTGTTC 13735946
Query 134073 CATTCAACATTGCTTCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAG 134132
|||| |||||||||||||| || | ||||||||||| | ||| |||||||||| |||
Sbjct 13735945 CATTTAACATTGCTTCATACTCTCTTTTAACTCATATGATTGCAAAAGTTTGTGGAATAG 13735886
Query 134133 AAGTTGGTGAGTTTGTATGGATGGGTGGAGATGTTCACATTTATAAAAATCACGTAGAAG 134192
||||| ||||| | |||||||| ||| || || ||||||||| | || |
Sbjct 13735885 CTACAGGTGAATTTGTTCACACTATTGGAGATGCTCATATATACAAAAATCACATTGATG 13735826
Query 134193 CAGTTCAGGAACAACTTTCACGTGAACCTAAAGAATTACCAAC 134235
|| || | ||| | | ||||||||| | |||| |||||
Sbjct 13735825 CACTTAAACTTCAATTAACTCGTGAACCTTATCAATTTCCAAC 13735783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1147588415027230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |