Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_019515.1
Length=93839
Score E
Sequences producing significant alignments: (Bits) Value
seq2 125 4e-24
>seq2
Length=16759152
Score = 125 bits (138), Expect = 4e-24
Identities = 186/259 (72%), Gaps = 5/259 (2%)
Strand=Plus/Plus
Query 78363 ATATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGT 78422
|| ||||| ||||| |||||||| || || || ||||||| || || ||| | | |
Sbjct 13735831 ATGTGATTTTTGTATATATGAGCATCTCCAATAGTGTGAACAAATTCACCTGTAGCTATT 13735890
Query 78423 CCGCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATT 78482
|| || | | ||||| ||||| || | | | |||||||||||||||||||||||
Sbjct 13735891 CCACAAACTTTTGCAATCATATGAGTTAAAAGAGAGTATGAAGCAATGTTAAATGGAACA 13735950
Query 78483 CCTAAGA-ATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGA 78541
|| |||| || || || || ||||| ||||| |||||||||| | |||||| |||
Sbjct 13735951 CC-AAGACCAACATCCCCACTACGTTGATACAAATGGCAACTTAATTCTCCATC--TTGA 13736007
Query 78542 TACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAGTCAGCAGG 78601
|| ||||| || || ||| ||||| || || | |||| | ||| | |||| ||
Sbjct 13736008 -ACATAAAATTGAGCTAAAGTATGACATGGAGGCAAAACCATTTTATCAAGATCAGATGG 13736066
Query 78602 ATTCCAAGCAGACACAATA 78620
|||||| ||||| | ||||
Sbjct 13736067 ATTCCATGCAGATAAAATA 13736085
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300159506143000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |