Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq2 125 4e-24 >seq2 Length=16759152 Score = 125 bits (138), Expect = 4e-24 Identities = 186/259 (72%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 78363 ATATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGT 78422 || ||||| ||||| |||||||| || || || ||||||| || || ||| | | | Sbjct 13735831 ATGTGATTTTTGTATATATGAGCATCTCCAATAGTGTGAACAAATTCACCTGTAGCTATT 13735890 Query 78423 CCGCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATT 78482 || || | | ||||| ||||| || | | | ||||||||||||||||||||||| Sbjct 13735891 CCACAAACTTTTGCAATCATATGAGTTAAAAGAGAGTATGAAGCAATGTTAAATGGAACA 13735950 Query 78483 CCTAAGA-ATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGA 78541 || |||| || || || || ||||| ||||| |||||||||| | |||||| ||| Sbjct 13735951 CC-AAGACCAACATCCCCACTACGTTGATACAAATGGCAACTTAATTCTCCATC--TTGA 13736007 Query 78542 TACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAGTCAGCAGG 78601 || ||||| || || ||| ||||| || || | |||| | ||| | |||| || Sbjct 13736008 -ACATAAAATTGAGCTAAAGTATGACATGGAGGCAAAACCATTTTATCAAGATCAGATGG 13736066 Query 78602 ATTCCAAGCAGACACAATA 78620 |||||| ||||| | |||| Sbjct 13736067 ATTCCATGCAGATAAAATA 13736085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300159506143000