Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2 293 1e-74 seq1 174 8e-39 >seq2 Length=16759152 Score = 293 bits (324), Expect = 1e-74 Identities = 1227/1903 (64%), Gaps = 79/1903 (4%) Strand=Plus/Minus Query 24686 GCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAA 24745 |||||||||||||| | |||||||||||| ||||| || ||||| || |||||| Sbjct 8586474 GCTGGTTTAGTTCTTAAATAATACATTCCCGTTTTTAAGCCACGTTTCCATCCATAAAAA 8586415 Query 24746 TGCATTGATGTTAGTTTTGCA-ATGTTTGCTGATTC---TAAAAAC-AAGTTCATCGATT 24800 |||||||| | | | || | ||| | | | | |||| || |||| |||| Sbjct 8586414 TGCATTGAACTACATATACCATAAGTTGGTTTACTTAGATAAAGACTAAGT-----GATT 8586360 Query 24801 GAGCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATA 24860 ||| ||| || |||| | | ||| ||||| | |||| || ||| || | Sbjct 8586359 GAGATTGATCAATAAAAGGCCCCCGATCAGCAGCCATTCCAATAATGTCTTTTTGTGAAA 8586300 Query 24861 TATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAA 24920 | || | | ||||| || |||| || || |||||||| | |||||||||| Sbjct 8586299 TTTCCCATACAGTTTTATAAAGTTCTTGGATGTCTTTTGGAATATCAGGTATATTTTGAA 8586240 Query 24921 CTGATCCATTTTCTCTCAATAGATTCAATCTCATATTCGGTG--TCCAAAGATTAATTTT 24978 |||||||| | | ||||| ||| || || || | |||||| ||||| Sbjct 8586239 TGGATCCATTATTT-TCAATT-ATTTTATTGAGTAATCCTTCATTCCAAATATTAAGAGA 8586182 Query 24979 TTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCT 25038 | ||| | | | || |||||| | ||| |||||||| ||||||| || Sbjct 8586181 AATTAAATCACGTAGAAGATGAGTATTTACAACTTGAAAATCTCCAGATAAAACTCGCCT 8586122 Query 25039 TATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGT 25098 | | ||| || ||||| ||||||||| | ||||||| ||||| | |||||||| || Sbjct 8586121 TGTATATATATTAGAAGTATATGGTTCAATAGATTCATTGTTTCCAAGAATTTGAGATGT 8586062 Query 25099 AGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTC 25158 ||||||||| |||||| || ||||||| ||||| | | |||| | | ||| || Sbjct 8586061 AGATGCTGTAGGCATTGGAGCAATTAATAATGAATTGCGAAGACCAAAACGTATAATTTC 8586002 Query 25159 TTGTTTTAATTTATCCCAATCTAAATTATTATCTAACTCG--ATATCGTTATCATATAAA 25216 ||| ||||| ||||||| || | || | ||| | ||| | || || ||| Sbjct 8586001 TTGCTTTAAAATATCCCATTCCCA-----TAAATCACTTGGAATAACATTC-CACATA-- 8585950 Query 25217 TCAAATTGTAACAATCCACTTGCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTTTT 25276 ||| | || | | ||| | | ||| || || | | || ||| ||| || | Sbjct 8585949 TCATACTGAAGAATTCCTTTGGATGCTGGAGAATCTTTGAATGTTTCATAACATCCATAC 8585890 Query 25277 GTTATTGCCATATCTTTTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCGCT 25336 | ||| || || || || | ||| ||| ||| ||| |||||||||| | Sbjct 8585889 TTCTTTGACAATTCACAGGAAGCTTCAAGTGCACCATGATAAATAGTTTCAAAAATT--T 8585832 Query 25337 TTGT-TTAAAAACTT-AGCTTTTTCTCCATCGAAAGCAATTTCCATTAAGGCGAACGTAT 25394 || | |||| | ||| ||||| | | ||||| | ||| | || |||| Sbjct 8585831 TTATATTAAGATCTTTAGCTTCTGGTGATGTGAAAGGATACCTCATAAGCAAAAATGTAT 8585772 Query 25395 CTGCTAATCCCTGAACTCCTAATCCAACTGGACGATGTTTATTATTACTTATCTCAGTTT 25454 | || | ||| ||||| || | ||||| ||||||||| ||| ||| || || || Sbjct 8585771 CAGCAAGTCCTTGAACACCAATTCCAATTGGACGATGCTTAAGATTTGATAAACGAGCTT 8585712 Query 25455 CTGATGTTGGATAGAAATTTGTATCGATCACATTATCTAGATTCTTTATGGCAAGCTTTG 25514 || | |||||| ||||| |||| || | |||| || ||| || | ||| |||| Sbjct 8585711 CTTCTAGTGGATAAAAATTAATATCAATAATTTTATTTAAATTTCTTGTTACAATTTTTG 8585652 Query 25515 TGTATTTTCTCAA-CTCAATAAAGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTACA 25573 | | | | || | |||||||||| ||| || | | ||| || | ||| Sbjct 8585651 TC-ACATCATGAAGCATTTTAAAGTCAAATGTAGGTTTTT------TTTCTTTTATAACA 8585599 Query 25574 A-ATTTAGATAAAGCG--ATTGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCAGAA 25630 | | | || ||| | ||||||||||||||||||||||| ||| | | || Sbjct 8585598 ACAAACATATTAAGTGCAATTGATGCTAAATTACAAACAGCAACTTCGCTTGGAGAACAA 8585539 Query 25631 TATTCATTGATCTCGATACATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATTA 25690 |||| | | || || |||||| || | || | || ||| |||| | ||||||| Sbjct 8585538 TATTGAATAATTTCAGTACATAGATTTGAACATCTAATCGTTCCTAAATTTTGTTGATTA 8585479 Query 25691 -TTGCATGTATTGACAAT-ATCTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGAG 25748 || | | ||| ||||| ||||||||| | | |||||| | || |||||||| |||| Sbjct 8585478 CTTTTACG-ATT-ACAATGATCTTTATAAACCATATATGGAATACCAGTTTCAATCTGAG 8585421 Query 25749 ATACTAAAATTTTCTCCCAAAGTTCTCTCGCTTTTACTTTCTTTACGAAGTTACCATCAG 25808 || | ||||||||| ||||| ||| ||||||| || |||| ||| | ||| Sbjct 8585420 ATTCACAAATTTTCTGCCAAACAAATCTAGCTTTTATTTGCTTTCGGAACCTTTTTTCAT 8585361 Query 25809 AAACAGCTCTTTCGTAAAGTTCAACAAATTCTTGATTTATTTTCTCAGAGAAAAGTTTGC 25868 || | | ||||||||| |||||| | ||| ||| || Sbjct 8585360 TTTCATATTTAATATAAAGTTCATCAAATT------------TATCACCAAAACAATTAT 8585313 Query 25869 CATATTTATTGAGAATAATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTT 25928 || | | || | | ||| ||||| | ||| ||||| | || || ||||| Sbjct 8585312 CA-AGACCTGGACATTCATAA--GGACACATTAATGACCAATGAAGATCCTGTTCAACAC 8585256 Query 25929 TCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTT 25988 | ||||||||||||||||| ||| | | ||||||||||||| | ||||| ||||| Sbjct 8585255 GTTTCATAAATAAATCTGGAACCCAAAGTCCATAAAATAAATCACGAGCTCTTGCTTCTT 8585196 Query 25989 CTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCT 26047 || || ||| || ||| ||| |||||| || || | ||||| | ||||||||||| Sbjct 8585195 CTGGACCTGTGTTT-TTTCTTAAATCTAAAAATTCCATTATATCAGCATGCCATGGTTCC 8585137 Query 26048 AAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTT 26107 || ||||| ||||| || || ||| ||||| ||||| || || | ||||| Sbjct 8585136 AAGTAGATTGCAAATGCCCCAGGTCGTTTATTACCACCCTGATCAACATAACGAGCAGTA 8585077 Query 26108 TCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTG----TGCTATG 26163 ||| |||| |||||||| | ||| ||| |||| |||| |||| ||| || Sbjct 8585076 CTATTATAAACACGTAACATTGGTATTAAACCATTTGATGATCCATTTGTTCCTGCAATA 8585017 Query 26164 AATCTTGGATCCTGTCGATCTAATATC-GTGAGCATGAATACCGATTCCACCAGCCCATT 26222 ||| | ||| | | | ||| | | || | ||| || ||||| || || ||| Sbjct 8585016 AAT----GTTCCAGAAGCACGAATTCCAGAGATACTTAAT-CCAATTCCTCCGGCAGATT 8584962 Query 26223 TTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCA 26282 ||||||| ||||| | | | || || ||||||||| || |||| | || Sbjct 8584961 TTGAAATTATAGCACATTGTTTCAAAGTGTCATAAATTCCTTCAATAGAATCATCAGCCA 8584902 Query 26283 TTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCG 26342 || |||||||||||| || |||||||| | | ||| ||||||| |||||||||||| | Sbjct 8584901 TTGTTAATAAAAAACATGACGATAATTGTGCACGAGAAGTTCCTGCATTAAATAATGTTG 8584842 Query 26343 GTGTAGCATGAGTATAATATCCTTCACTCAAAGCTGTATAAGTTTCAAGAACTTCATCGA 26402 | | ||||||| || | || || | || | | ||| || |||| | | | | | Sbjct 8584841 GGGAAGCATGAATAAACCATTTTTTAGACATATATAAATATGTCTCAATAGCAGAAGCAA 8584782 Query 26403 TATTGTAATTACTAACTTCAATAGCTGTTCTTAACCACATATATTGAGGTCGTT---CAA 26459 ||| | || || | | |||||| || | ||||||||||||||| || ||| Sbjct 8584781 TATCTTCTCTATGAATTGCTATAGCTACTCGCATTAACATATATTGAGGTCTTTCCACAA 8584722 Query 26460 TTACATTATTTTCCGCATCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAAT 26519 || || ||| | ||| |||| ||||| ||| ||||| ||| | |||||||||| Sbjct 8584721 TTTTATCATT----GATTCT-TAAT-AAATATGATCGTTCTAGTGTTCTAAATCCAAAAT 8584668 Query 26520 AATCATGATTGAAATCTCTTTTTTGTACTATAATTGAATCAAG 26562 | | ||| |||||| ||| | | | |||| ||| ||||| Sbjct 8584667 ATGTAAAATTAAAATCTTTTTCATTTTCAATAACTGAGTCAAG 8584625 >seq1 Length=11693564 Score = 174 bits (192), Expect = 8e-39 Identities = 293/424 (69%), Gaps = 0/424 (0%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||||||||| |||||||| | ||||||||||||| | ||||| |||||| Sbjct 6014397 CATAAATAAATCAGGAATCCAAAGACCATAAAATAAATCACGAGCTCTTTCTTCTTCAGG 6014456 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || ||| || || ||||| || || || ||||| || | ||||||||||||| ||| Sbjct 6014457 GCCTGTATTTTTCTTAAGATCCAAAAATTCTAAAATGTCAGCATGCCATGGTTCTAGATA 6014516 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 |||||||| || |||||| ||| ||||| || || || | ||| || | || Sbjct 6014517 TATAGCAAATGCTCCAGGTCTTTTATTTCCCCCTTGGTCAACATAGCGTGCTGTATTGTT 6014576 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 |||||| |||||||||| | ||||||| | || || ||||| | | ||| || Sbjct 6014577 AAAAACTCTCAACATTGGTATTAATCCATTAGATGTACCATTTGTACCACCAATAAAAGA 6014636 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232 || | | | |||| ||| ||| | || || || ||||| |||||||||| Sbjct 6014637 ACCATTAGCACGAATACAATGAACATTCAATCCAATACCGCCAGCAGATTTTGAAATTAA 6014696 Query 26233 TGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAA 26292 |||||| | | || ||||| | || |||| || |||| | |||| || ||| Sbjct 6014697 TGCACATTGTTTAAGAGTATCATATATACCTTCAATTGAATCATCAGACATTGTTAGTAA 6014756 Query 26293 AAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATG 26352 ||||| ||||| | || | | | | ||||||| |||||||||||| || | ||||| Sbjct 6014757 GAAACACGAAGACAGCTGTGGACGTCTGGTTCCTGCATTAAATAATGTTGGAGAGGCATG 6014816 Query 26353 AGTA 26356 |||| Sbjct 6014817 AGTA 6014820 Score = 109 bits (120), Expect = 3e-19 Identities = 332/506 (66%), Gaps = 24/506 (5%) Strand=Plus/Plus Query 24686 GCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAA 24745 || ||||| ||||| | ||||||||||||||||| ||| ||||||| | |||| Sbjct 6013174 GCAGGTTTTGTTCTTAAGTAATACATTCCAGTTTTTAATCCACGTTTCCAACTATGAAAA 6013233 Query 24746 TGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAG----TTCATCGATTG 24801 |||||||| | | ||| | || || || || |||| | || | |||||| Sbjct 6013234 TGCATTGAACTACAAATGGCA---TATGATGGTT-TAGCAACATGAAGATTAAGCGATTG 6013289 Query 24802 AGCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATGAT--CGTTTTCATCGAT 24859 | ||| | |||| | ||| ||||| | ||||| || | |||| | ||| Sbjct 6013290 TGATTGATCTATAAAAGCACCACGATCAGCAGCCATCTCAATTATATCTTTTTGA--GAT 6013347 Query 24860 ATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGA 24919 || || || | ||||| || ||||| || | || |||||| | ||||||||| Sbjct 6013348 ATTTCCCAAACAGTTTTATAAAGTTCTTTAATATTAGGTGGAATTTCTTTAATATTTTGG 6013407 Query 24920 ACTGATCCATTTT---CTCTCAATAGATTCAAT--CTCAT-ATTCGGTGTCCAAAGATTA 24973 | |||||||| | || | | ||||| | ||| | | || | | ||||| | Sbjct 6013408 ATAGATCCATTATTAGCTATTATCTCATTCATTAACTCTTCACTCCATATGTTAAGATCA 6013467 Query 24974 ATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACT 25033 ||| | |||| ||| | || ||| | || || ||||| || | ||| Sbjct 6013468 ATT------AAATCTTTAAGAAGATGAGGATTGACAATTTGGAAATCTCCTGAAAGAACA 6013521 Query 25034 CTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGA 25093 | ||| | | | ||| ||||| ||||||||| | ||||||||||||||| || || Sbjct 6013522 CGTCTAGTGTAAATGTTAGAAGTATATGGTTCAATAGATTCATTATTTCCTAGAATCTGT 6013581 Query 25094 GAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACA 25153 | ||| || || ||||||||| || | ||||| |||||||| | ||||| ||| || Sbjct 6013582 GCAGTTGAAGCAGTTGGCATTGGAGCAAGTAATAAAGAATTTCTTACACCATGTTTTGCA 6013641 Query 25154 ATCTCTTGTTTTAATTTATCCCAATC 25179 || ||| |||||| | |||||||| Sbjct 6013642 ATGTCTGCTTTTAAAGTTTCCCAATC 6013667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039583670125