Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq2 259 6e-64
>seq2
Length=16759152
Score = 259 bits (286), Expect = 6e-64
Identities = 489/712 (69%), Gaps = 8/712 (1%)
Strand=Plus/Plus
Query 138162 AATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGT 138221
|| |||| ||||| || |||||||||||||| | |||||||| ||||||||||||
Sbjct 12849519 AAAGGTGCAAGATGACTTTTAACACCAATAGGACCCATTCCAGGACCACCACCTCCATGT 12849578
Query 138222 GGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGT 138281
||||||||||| || ||||| | ||||| ||| | ||||| |||||| || | ||||
Sbjct 12849579 GGAATACAGAAAGTTTTATGAAGATTTAAATGTGACACATCACTACCATAATCTCCTGGT 12849638
Query 138282 TTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTG 138341
| || |||||||||||||| | |||||| ||||| ||||| ||||| || |||||
Sbjct 12849639 CTACATAATCCTACCTGTGCATTGAAATTTGCTCCATCAAGATAAACCTGTCCTCCATTT 12849698
Query 138342 TCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGA 138401
|||||||| | ||||| | | || || ||||||| |||||||| || ||||||
Sbjct 12849699 TCATGAACTTTATTACAAACATCAACAATATTACTTTCAAAAACACCATGTGTAGATGGA 12849758
Query 138402 TATGTAATCATAATA-CATGAGAGTTCA--AATGTATTCATGATTGCTTTCTTCTCTAGA 138458
|| || | ||| ||| || | |||||| | |||||| | ||||||| | |||
Sbjct 12849759 TAAGTTACCATTATAGCACCA-AGTTCATTAGTGTATT--TTTCTGCTTTCATAGAAAGA 12849815
Query 138459 TCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCC 138518
|||||| | || || |||| | ||| | | ||| |||||||| | || |
Sbjct 12849816 TCTTTGTAATTAATATTACCATGTTTATCTGATTCAACAGGGACAACTTTAAAATTTGAC 12849875
Query 138519 ATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTT 138578
|| ||| |||||||| |||||||| || || |||||| ||||| | ||||||
Sbjct 12849876 ATTGAAGCAGAGGCAGGATTTGTTCCATGAGCAGATGATGGTATAAGACAAATATTTCTA 12849935
Query 138579 TTATCATCTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCC 138638
|| || | ||| || | |||| ||| || ||||| | |||||||| |||||
Sbjct 12849936 TTTTCTTGTCCAATAGATTTAAGATAACCTTTAATAGCTAATAAACCTGCATATTCACCA 12849995
Query 138639 TGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCAT 138698
| | ||| || ||||| | || | | |||| |||| || || ||||| | |||
Sbjct 12849996 TTAGCTCCACTATTTGGTTGAAGAGAAAAATTATCATAACCAGTAATTTCACAAAGCCAC 12850055
Query 138699 TTCTGTAAGTCATCTATTATCTTTTGATAACCCATGGTCTGTATC-ATAGGTGTATGTGG 138757
|| | | ||||| | || ||||||||||| | | || ||| | ||| | |||
Sbjct 12850056 TTTTCAAGGTCATTAAAAATTTTTTGATAACCTTTAG-CTTGATCAACTGGTACAAATGG 12850114
Query 138758 ATGCACGTTGGCAAATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTT 138817
||| | || | || | ||||| | || | || |||||||| ||||||| |||
Sbjct 12850115 ATGTATATTTGATAAACTTGGCCATGTTAAGGGTAACATTTCTGCTGAAGCATTTAATTT 12850174
Query 138818 CATTGTGCAACTACCAAGTGGAACCATACCATTTACTAATGAGAAATCTTTA 138869
|||||| || || | || | ||| || ||| | || |||||||||
Sbjct 12850175 CATTGTACATGATCCTAAAGGTATCATTGAATGTACAAGAGATAAATCTTTA 12850226
Score = 104 bits (114), Expect = 3e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 139238 AATTCTTCTTGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGA 139297
|||| ||||| |||| || |||| | || | ||||||||| ||||||| | | |||
Sbjct 12850622 AATTTTTCTTCCTATTGCTTGTAAACGATGAGGACCATGATAAACTGCATACATTGCAGC 12850681
Query 139298 CATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAAT 139357
|||||||| | | ||||||| || || || || || ||||| |||||||||||
Sbjct 12850682 AATATTTGCTGGTAAAGCTTGTGACGTACAAATATTTGATGTAGCTTTATCTCTTCTAAT 12850741
Query 139358 ATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGA 139417
||| || ||||| ||||| |||||||||| |||| ||| || | || |||
Sbjct 12850742 ATGTTGTTCTCTTGTTTGAAGTGCTAATCGAAATGCTTTATTTCCATGAACATCTTTTGA 12850801
Query 139418 CTGACCTACAATTCTGCCAGGTATC 139442
|||||| ||||| || ||||||
Sbjct 12850802 TACACCTACTATTCTTCCTGGTATC 12850826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578997422940200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |