Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2 259 6e-64 >seq2 Length=16759152 Score = 259 bits (286), Expect = 6e-64 Identities = 489/712 (69%), Gaps = 8/712 (1%) Strand=Plus/Plus Query 138162 AATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGT 138221 || |||| ||||| || |||||||||||||| | |||||||| |||||||||||| Sbjct 12849519 AAAGGTGCAAGATGACTTTTAACACCAATAGGACCCATTCCAGGACCACCACCTCCATGT 12849578 Query 138222 GGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGT 138281 ||||||||||| || ||||| | ||||| ||| | ||||| |||||| || | |||| Sbjct 12849579 GGAATACAGAAAGTTTTATGAAGATTTAAATGTGACACATCACTACCATAATCTCCTGGT 12849638 Query 138282 TTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTG 138341 | || |||||||||||||| | |||||| ||||| ||||| ||||| || ||||| Sbjct 12849639 CTACATAATCCTACCTGTGCATTGAAATTTGCTCCATCAAGATAAACCTGTCCTCCATTT 12849698 Query 138342 TCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGA 138401 |||||||| | ||||| | | || || ||||||| |||||||| || |||||| Sbjct 12849699 TCATGAACTTTATTACAAACATCAACAATATTACTTTCAAAAACACCATGTGTAGATGGA 12849758 Query 138402 TATGTAATCATAATA-CATGAGAGTTCA--AATGTATTCATGATTGCTTTCTTCTCTAGA 138458 || || | ||| ||| || | |||||| | |||||| | ||||||| | ||| Sbjct 12849759 TAAGTTACCATTATAGCACCA-AGTTCATTAGTGTATT--TTTCTGCTTTCATAGAAAGA 12849815 Query 138459 TCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCC 138518 |||||| | || || |||| | ||| | | ||| |||||||| | || | Sbjct 12849816 TCTTTGTAATTAATATTACCATGTTTATCTGATTCAACAGGGACAACTTTAAAATTTGAC 12849875 Query 138519 ATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTT 138578 || ||| |||||||| |||||||| || || |||||| ||||| | |||||| Sbjct 12849876 ATTGAAGCAGAGGCAGGATTTGTTCCATGAGCAGATGATGGTATAAGACAAATATTTCTA 12849935 Query 138579 TTATCATCTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCC 138638 || || | ||| || | |||| ||| || ||||| | |||||||| ||||| Sbjct 12849936 TTTTCTTGTCCAATAGATTTAAGATAACCTTTAATAGCTAATAAACCTGCATATTCACCA 12849995 Query 138639 TGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCAT 138698 | | ||| || ||||| | || | | |||| |||| || || ||||| | ||| Sbjct 12849996 TTAGCTCCACTATTTGGTTGAAGAGAAAAATTATCATAACCAGTAATTTCACAAAGCCAC 12850055 Query 138699 TTCTGTAAGTCATCTATTATCTTTTGATAACCCATGGTCTGTATC-ATAGGTGTATGTGG 138757 || | | ||||| | || ||||||||||| | | || ||| | ||| | ||| Sbjct 12850056 TTTTCAAGGTCATTAAAAATTTTTTGATAACCTTTAG-CTTGATCAACTGGTACAAATGG 12850114 Query 138758 ATGCACGTTGGCAAATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTT 138817 ||| | || | || | ||||| | || | || |||||||| ||||||| ||| Sbjct 12850115 ATGTATATTTGATAAACTTGGCCATGTTAAGGGTAACATTTCTGCTGAAGCATTTAATTT 12850174 Query 138818 CATTGTGCAACTACCAAGTGGAACCATACCATTTACTAATGAGAAATCTTTA 138869 |||||| || || | || | ||| || ||| | || ||||||||| Sbjct 12850175 CATTGTACATGATCCTAAAGGTATCATTGAATGTACAAGAGATAAATCTTTA 12850226 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 139238 AATTCTTCTTGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGA 139297 |||| ||||| |||| || |||| | || | ||||||||| ||||||| | | ||| Sbjct 12850622 AATTTTTCTTCCTATTGCTTGTAAACGATGAGGACCATGATAAACTGCATACATTGCAGC 12850681 Query 139298 CATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAAT 139357 |||||||| | | ||||||| || || || || || ||||| ||||||||||| Sbjct 12850682 AATATTTGCTGGTAAAGCTTGTGACGTACAAATATTTGATGTAGCTTTATCTCTTCTAAT 12850741 Query 139358 ATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGA 139417 ||| || ||||| ||||| |||||||||| |||| ||| || | || ||| Sbjct 12850742 ATGTTGTTCTCTTGTTTGAAGTGCTAATCGAAATGCTTTATTTCCATGAACATCTTTTGA 12850801 Query 139418 CTGACCTACAATTCTGCCAGGTATC 139442 |||||| ||||| || |||||| Sbjct 12850802 TACACCTACTATTCTTCCTGGTATC 12850826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578997422940200