Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2 260 2e-64 >seq2 Length=16759152 Score = 260 bits (288), Expect = 2e-64 Identities = 524/775 (68%), Gaps = 49/775 (6%) Strand=Plus/Plus Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844 |||||||| | |||||||||||||| | | | || ||||| || ||| |||||| ||| Sbjct 11787427 TTTCCTGTAGATATAACAAAATCATCTGCTACATCATGTTGGAGGATTCTCCACATTGCC 11787486 Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAA 47904 || ||||| ||| | ||||| ||||| ||||| ||||| | ||| || ||| |||| Sbjct 11787487 TCTACATACTCTTTTGCATGGCCCCAATCACGTTTAGCATCCAAATTACCAAGAGATAAT 11787546 Query 47905 CAGTCTTGCTTACCTTCAGAGATTGCTTTTAAT----GCTCTTGTAATCTTACGAGTTAC 47960 ||||| |||| | ||| ||||| ||||||||||| || | ||||| Sbjct 11787547 GTTTCTTGAACACCT----ATATTAATTTTAGCTACAGCTCTTGTAATTTTTCTTGTTAC 11787602 Query 47961 AAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACAT 48020 |||| | | ||| | |||||| |||||||||||||| | || ||| |||| ||| | || Sbjct 11787603 AAAATTATTACCTCTTCTTGGTGATTCATGATTAAATAATATTCCATTACAAGCAAAAAT 11787662 Query 48021 TCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATA 48080 ||| |||| ||||||||| || || | |||||| | |||| | |||||| || |||| Sbjct 11787663 TCCATATGCTTCACGATAATTTTTAATTATCCAAAATGCATATAATTTTGCTACTGCATA 11787722 Query 48081 AGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATA 48140 |||| | ||||| || ||||| || ||| | |||||| | ||||| || || ||||| Sbjct 11787723 AGGACTTCTAGGATAAAATGGTGTTGTTTCTTTTTGTGGAATTTCTTGAACTTTTCCATA 11787782 Query 48141 AAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTT--CCATCTCAAGCAAACGG 48198 |||||| ||| || || ||||| | |||| ||| || || || || | Sbjct 11787783 AAGTTCTGAGGTAGAAGCCTGATAAAATTTAACCTTATGTTGAAGATTACATGCTA--CA 11787840 Query 48199 ACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCT--GTCTGACCAGTATACTCGGGCA 48256 | || || || | ||| | || |||| |||||| |||| | ||||| || || | Sbjct 11787841 ATAGCATCTAGAAGTCTTAATGTACCTACTGCATCTACTTCTG--CTGTATATTCAGGTA 11787898 Query 48257 TCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAA 48316 ||||| ||| || |||||||| ||||| |||||| |||||| ||| |||||||| Sbjct 11787899 AATCAAAACTAACTTTAACATGACTTTGTGCAGCAAGATGATAAATTTCAGTTGGTTGAA 11787958 Query 48317 CCTGCTGA-ATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTT 48375 | ||| || | | | | | || || || || | || |||||||| | || Sbjct 11787959 -TTTTTGATATCAATTTAATAAGACATGATGAATCAGTCATATCACCATAATGAAGTTGA 11788017 Query 48376 AAT-----TGATC------------------------ATAAATGTGATCAATTCTATGTG 48406 ||| ||||| ||||||||| |||| | ||| | Sbjct 11788018 AATGTTGATGATCCTTTATGTATATTTGGATCAGCATATAAATGTG--CAATCCGATGAG 11788075 Query 48407 TATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCATACCCCTTTTCAAGAAGAA 48466 |||||| | ||||| | || | ||||||||| || ||| || || | | ||| | Sbjct 11788076 TATTAAATGTAGAAGATCTGCGTATAATACCATGTACAGAATATCCTTTGGCTATAAGTA 11788135 Query 48467 GTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGTGATTAAAGCAACTTT 48521 |||| || || || ||||||||||| || || ||||| || || | ||| | ||| Sbjct 11788136 GTTCAGCCAAATAAGAACCATCTTGACCAGTTATACCGGTAATAAGAGCTATTTT 11788190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665493276978200