Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq2 260 2e-64
>seq2
Length=16759152
Score = 260 bits (288), Expect = 2e-64
Identities = 524/775 (68%), Gaps = 49/775 (6%)
Strand=Plus/Plus
Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844
|||||||| | |||||||||||||| | | | || ||||| || ||| |||||| |||
Sbjct 11787427 TTTCCTGTAGATATAACAAAATCATCTGCTACATCATGTTGGAGGATTCTCCACATTGCC 11787486
Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAA 47904
|| ||||| ||| | ||||| ||||| ||||| ||||| | ||| || ||| ||||
Sbjct 11787487 TCTACATACTCTTTTGCATGGCCCCAATCACGTTTAGCATCCAAATTACCAAGAGATAAT 11787546
Query 47905 CAGTCTTGCTTACCTTCAGAGATTGCTTTTAAT----GCTCTTGTAATCTTACGAGTTAC 47960
||||| |||| | ||| ||||| ||||||||||| || | |||||
Sbjct 11787547 GTTTCTTGAACACCT----ATATTAATTTTAGCTACAGCTCTTGTAATTTTTCTTGTTAC 11787602
Query 47961 AAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACAT 48020
|||| | | ||| | |||||| |||||||||||||| | || ||| |||| ||| | ||
Sbjct 11787603 AAAATTATTACCTCTTCTTGGTGATTCATGATTAAATAATATTCCATTACAAGCAAAAAT 11787662
Query 48021 TCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATA 48080
||| |||| ||||||||| || || | |||||| | |||| | |||||| || ||||
Sbjct 11787663 TCCATATGCTTCACGATAATTTTTAATTATCCAAAATGCATATAATTTTGCTACTGCATA 11787722
Query 48081 AGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATA 48140
|||| | ||||| || ||||| || ||| | |||||| | ||||| || || |||||
Sbjct 11787723 AGGACTTCTAGGATAAAATGGTGTTGTTTCTTTTTGTGGAATTTCTTGAACTTTTCCATA 11787782
Query 48141 AAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTT--CCATCTCAAGCAAACGG 48198
|||||| ||| || || ||||| | |||| ||| || || || || |
Sbjct 11787783 AAGTTCTGAGGTAGAAGCCTGATAAAATTTAACCTTATGTTGAAGATTACATGCTA--CA 11787840
Query 48199 ACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCT--GTCTGACCAGTATACTCGGGCA 48256
| || || || | ||| | || |||| |||||| |||| | ||||| || || |
Sbjct 11787841 ATAGCATCTAGAAGTCTTAATGTACCTACTGCATCTACTTCTG--CTGTATATTCAGGTA 11787898
Query 48257 TCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAA 48316
||||| ||| || |||||||| ||||| |||||| |||||| ||| ||||||||
Sbjct 11787899 AATCAAAACTAACTTTAACATGACTTTGTGCAGCAAGATGATAAATTTCAGTTGGTTGAA 11787958
Query 48317 CCTGCTGA-ATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTT 48375
| ||| || | | | | | || || || || | || |||||||| | ||
Sbjct 11787959 -TTTTTGATATCAATTTAATAAGACATGATGAATCAGTCATATCACCATAATGAAGTTGA 11788017
Query 48376 AAT-----TGATC------------------------ATAAATGTGATCAATTCTATGTG 48406
||| ||||| ||||||||| |||| | ||| |
Sbjct 11788018 AATGTTGATGATCCTTTATGTATATTTGGATCAGCATATAAATGTG--CAATCCGATGAG 11788075
Query 48407 TATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCATACCCCTTTTCAAGAAGAA 48466
|||||| | ||||| | || | ||||||||| || ||| || || | | ||| |
Sbjct 11788076 TATTAAATGTAGAAGATCTGCGTATAATACCATGTACAGAATATCCTTTGGCTATAAGTA 11788135
Query 48467 GTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGTGATTAAAGCAACTTT 48521
|||| || || || ||||||||||| || || ||||| || || | ||| | |||
Sbjct 11788136 GTTCAGCCAAATAAGAACCATCTTGACCAGTTATACCGGTAATAAGAGCTATTTT 11788190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 665493276978200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |