Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 2e-12 >seq2 Length=16759152 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334 |||||| || || || ||| || ||||| | || |||||||| || || || | Sbjct 9292906 TGGTGCTAAAATTCCTAAAGGAGCTCTTCTTACAGGACCACCAGGTACAGGTAAAACATT 9292965 Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAA 175393 || || ||||| || |||||| | ||||| ||||| || |||| |||| || Sbjct 9292966 ACTTGCTAAAGCCACTGCTGGTGAAGCTAATGTACCATTTATAACAGTA-TCTGGATCAG 9293024 Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 | ||| | || |||||||||||||| ||| | || || || ||| | |||| || | Sbjct 9293025 AGTTTCTTGAAATGTTTGTTGGTGTTGGTCCTGCTAGAGTACGTGATATGTTTGCTATGG 9293084 Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGG 175505 | | ||||| ||||||||| | || |||||||| || ||||| || || Sbjct 9293085 CTAGAAAAAATTCACCATGTATCTTGTTTATTGATGAAATAGATGCTGTTGG 9293136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568593288800