Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq2 87.8 2e-12
>seq2
Length=16759152
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334
|||||| || || || ||| || ||||| | || |||||||| || || || |
Sbjct 9292906 TGGTGCTAAAATTCCTAAAGGAGCTCTTCTTACAGGACCACCAGGTACAGGTAAAACATT 9292965
Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAA 175393
|| || ||||| || |||||| | ||||| ||||| || |||| |||| ||
Sbjct 9292966 ACTTGCTAAAGCCACTGCTGGTGAAGCTAATGTACCATTTATAACAGTA-TCTGGATCAG 9293024
Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453
| ||| | || |||||||||||||| ||| | || || || ||| | |||| || |
Sbjct 9293025 AGTTTCTTGAAATGTTTGTTGGTGTTGGTCCTGCTAGAGTACGTGATATGTTTGCTATGG 9293084
Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGG 175505
| | ||||| ||||||||| | || |||||||| || ||||| || ||
Sbjct 9293085 CTAGAAAAAATTCACCATGTATCTTGTTTATTGATGAAATAGATGCTGTTGG 9293136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596568593288800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |