Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq2 158 2e-33
>seq2
Length=16759152
Score = 158 bits (174), Expect = 2e-33
Identities = 164/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| |||| ||| | || | || || ||||||||||| || | ||||| |
Sbjct 10681816 CGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCA 10681757
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | ||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 10681756 TCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTG 10681697
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | || | ||| |||||| ||||||| ||| || || ||||| |||
Sbjct 10681696 TCTTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATA 10681637
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| ||||| | || || || || ||||||||
Sbjct 10681636 GTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602
Score = 154 bits (170), Expect = 3e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| |||| ||| | |||| ||||| ||||| ||||| || | ||||| |
Sbjct 10682272 CGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCA 10682213
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | ||||||||||||||| || ||||| |||||||| || || |||||||| |||
Sbjct 10682212 TCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTA 10682153
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| ||||| | ||| | ||| ||| || ||||| | || ||||| ||||| |||
Sbjct 10682152 TCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAATA 10682093
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||||| || || ||||| ||||||||
Sbjct 10682092 GTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058
Score = 154 bits (170), Expect = 3e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || |||| ||| | || | |||||| ||| || || || || | ||||| |
Sbjct 10683412 CGGAGAACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCA 10683353
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | ||| |||||||||||||||||||| |||||||| ||||| |||||||| |||
Sbjct 10683352 TCCTCAAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTA 10683293
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | ||| | ||| |||||| || || | |||||||| ||||| ||
Sbjct 10683292 TCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATG 10683233
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||||||||||| || || ||||| || |||||
Sbjct 10683232 GTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198
Score = 152 bits (168), Expect = 9e-32
Identities = 176/237 (74%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| ||||| || | | ||||| || | || | || | |||||| |||||
Sbjct 10682978 AATTTGCATACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGGATATT 10682919
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
|| || || | ||||| ||| || | ||||||||| |||||||||||||| |||||
Sbjct 10682918 GTAATCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTG 10682859
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
|| ||||| |||||||| |||||||| || || | ||| | ||| ||| || || ||
Sbjct 10682858 GTCTGGAGGAATTCCTTCCTTATCTTGGATCTTTGATTTGACATTGTCAATGGTGTCAGA 10682799
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| |||||||| ||||| |||||||||||||||| || || ||||| || |||||
Sbjct 10682798 AGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742
Score = 149 bits (164), Expect = 1e-30
Identities = 142/182 (78%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238
||||| ||||| || | ||||| ||| || | ||||||||||||||| ||||||||
Sbjct 10682467 ATATTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTT 10682408
Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298
|||||||| ||||| |||||||| |||||||| || || | || | || ||||||
Sbjct 10682407 TGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGACTTAACGTTGTCAATAGTG 10682348
Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358
|| || | |||||||| ||||| |||||||||||||||| || || ||||| || |||
Sbjct 10682347 TCAGATGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGC 10682288
Query 193359 AT 193360
||
Sbjct 10682287 AT 10682286
Score = 143 bits (158), Expect = 5e-29
Identities = 174/237 (73%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| ||||| || | | ||||| || | || | || | |||||| ||| ||
Sbjct 10682066 AATTTGCATACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTT 10682007
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
|| || || | || || ||| || | ||||||||| |||||||||||||| |||||
Sbjct 10682006 GTAATCAGAAAGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTG 10681947
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
|| ||||| |||||||| |||||||| ||||| | ||| | || ||||| || ||
Sbjct 10681946 GTCTGGAGGGATTCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGA 10681887
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| |||||||| ||||| |||||||||||||||| || || ||||| || |||||
Sbjct 10681886 TGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830
Score = 140 bits (154), Expect = 6e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| |||| ||| | || | || || ||||||||||| || | ||||| |
Sbjct 10683184 CGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCA 10683125
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | ||||||||||||||| || ||||| |||||||| ||||| |||||||| ||
Sbjct 10683124 TCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTG 10683065
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | ||| | ||| || || ||||| | || ||||| ||||| |||
Sbjct 10683064 TCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATA 10683005
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||||| || || ||||| ||||||||
Sbjct 10683004 GTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970
Score = 122 bits (134), Expect = 2e-22
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| |||| ||| | || | || || ||||||||||| || | ||||| |
Sbjct 10682728 CGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCA 10682669
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | ||||||||| |||||||||||||| |||||||| ||||| |||||||||||
Sbjct 10682668 TCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTG 10682609
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | ||| | ||| || || ||||| | || || || ||||| ||
Sbjct 10682608 TCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATG 10682549
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || | || || || || || |||||
Sbjct 10682548 GTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514
Score = 98.7 bits (108), Expect = 2e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
||||||||||| | | ||||| || || || ||||||||||| ||||| ||||||| |
Sbjct 15965447 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCT 15965388
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|||| |||| || || || || | ||| || || ||||| || || ||||| || ||
Sbjct 15965387 TTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAAGA 15965328
Query 193341 GTTTTTACAAATATTTGCATTT 193362
|| || || || || |||||||
Sbjct 15965327 GTCTTAACGAAAATCTGCATTT 15965306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899652881833200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |