Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2 158 2e-33 >seq2 Length=16759152 Score = 158 bits (174), Expect = 2e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||| | || | || || ||||||||||| || | ||||| | Sbjct 10681816 CGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCA 10681757 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||| ||||||||||||||||||||||| ||||| ||||||||||| Sbjct 10681756 TCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTG 10681697 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | ||| |||||| ||||||| ||| || || ||||| ||| Sbjct 10681696 TCTTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATA 10681637 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| | || || || || |||||||| Sbjct 10681636 GTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||| | |||| ||||| ||||| ||||| || | ||||| | Sbjct 10682272 CGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCA 10682213 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||||||||| || ||||| |||||||| || || |||||||| ||| Sbjct 10682212 TCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTA 10682153 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | ||| | ||| ||| || ||||| | || ||||| ||||| ||| Sbjct 10682152 TCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAATA 10682093 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||||| || || ||||| |||||||| Sbjct 10682092 GTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| ||| | || | |||||| ||| || || || || | ||||| | Sbjct 10683412 CGGAGAACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCA 10683353 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| |||||||||||||||||||| |||||||| ||||| |||||||| ||| Sbjct 10683352 TCCTCAAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTA 10683293 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | ||| |||||| || || | |||||||| ||||| || Sbjct 10683292 TCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATG 10683233 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||||||| || || ||||| || ||||| Sbjct 10683232 GTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198 Score = 152 bits (168), Expect = 9e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| || | | ||||| || | || | || | |||||| ||||| Sbjct 10682978 AATTTGCATACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGGATATT 10682919 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | ||||| ||| || | ||||||||| |||||||||||||| ||||| Sbjct 10682918 GTAATCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTG 10682859 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| |||||||| |||||||| || || | ||| | ||| ||| || || || Sbjct 10682858 GTCTGGAGGAATTCCTTCCTTATCTTGGATCTTTGATTTGACATTGTCAATGGTGTCAGA 10682799 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||| ||||| |||||||||||||||| || || ||||| || ||||| Sbjct 10682798 AGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742 Score = 149 bits (164), Expect = 1e-30 Identities = 142/182 (78%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||| || | ||||| ||| || | ||||||||||||||| |||||||| Sbjct 10682467 ATATTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTT 10682408 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| ||||| |||||||| |||||||| || || | || | || |||||| Sbjct 10682407 TGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGACTTAACGTTGTCAATAGTG 10682348 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | |||||||| ||||| |||||||||||||||| || || ||||| || ||| Sbjct 10682347 TCAGATGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGC 10682288 Query 193359 AT 193360 || Sbjct 10682287 AT 10682286 Score = 143 bits (158), Expect = 5e-29 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| || | | ||||| || | || | || | |||||| ||| || Sbjct 10682066 AATTTGCATACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTT 10682007 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | || || ||| || | ||||||||| |||||||||||||| ||||| Sbjct 10682006 GTAATCAGAAAGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTG 10681947 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| |||||||| |||||||| ||||| | ||| | || ||||| || || Sbjct 10681946 GTCTGGAGGGATTCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGA 10681887 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||||| ||||| |||||||||||||||| || || ||||| || ||||| Sbjct 10681886 TGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||| | || | || || ||||||||||| || | ||||| | Sbjct 10683184 CGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCA 10683125 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||||||||| || ||||| |||||||| ||||| |||||||| || Sbjct 10683124 TCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTG 10683065 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | ||| || || ||||| | || ||||| ||||| ||| Sbjct 10683064 TCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATA 10683005 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||||| || || ||||| |||||||| Sbjct 10683004 GTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||| | || | || || ||||||||||| || | ||||| | Sbjct 10682728 CGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCA 10682669 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||| |||||||||||||| |||||||| ||||| ||||||||||| Sbjct 10682668 TCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTG 10682609 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | ||| || || ||||| | || || || ||||| || Sbjct 10682608 TCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATG 10682549 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || | || || || || || ||||| Sbjct 10682548 GTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 ||||||||||| | | ||||| || || || ||||||||||| ||||| ||||||| | Sbjct 15965447 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCT 15965388 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| |||| || || || || | ||| || || ||||| || || ||||| || || Sbjct 15965387 TTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAAGA 15965328 Query 193341 GTTTTTACAAATATTTGCATTT 193362 || || || || || ||||||| Sbjct 15965327 GTCTTAACGAAAATCTGCATTT 15965306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899652881833200