Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 185 1e-41 >seq2 Length=16759152 Score = 185 bits (204), Expect = 1e-41 Identities = 484/723 (67%), Gaps = 21/723 (3%) Strand=Plus/Minus Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGA--TATTAAATTCATAAAATCAA 17936 ||||||||||| ||||||||||| ||||| || | ||| |||||| ||||||||||| Sbjct 14764724 ACTTTTTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAATATTAAC--CATAAAATCAA 14764667 Query 17937 ATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAA-TTCGTATAATAATCTATCTGCT 17995 | || || | |||||| | |||| ||||| ||| || || || ||| Sbjct 14764666 AGGGGTTCTTAACATTATAA-AGTTTTGAACAATTAAGTTCCACCAACAAATGGTCAGCT 14764608 Query 17996 ACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA-AGGTAG 18054 ||| |||| | |||| |||| ||| | ||||| || | | | | || ||| || Sbjct 14764607 ACATATTCAATATATGTACACATTAAACGTGAGTTCATTCCAATCA-TATCAACAGGAAG 14764549 Query 18055 AGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCT 18114 |||||| ||| |||| || || || ||||| | | ||| || || | | ||| | Sbjct 14764548 AGCATCTGTAAGGTATTCCTTTTCAATATCAACTGCATTTTTAATAATTTCTTTTATACG 14764489 Query 18115 AGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTG 18174 || | ||| || | || | || || |||| || || |||||| ||| Sbjct 14764488 TTCTTCAGATGGTTTGTTTTCAAGGTAACTA-AACATAAGG--CAGGCGAAATCACGGTG 14764432 Query 18175 TAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCt 18234 ||| || |||||||| || || ||||| || | || || || ||||| | ||| | Sbjct 14764431 TAATCCCTCATCTCTTGAAATCAATTCATTGGAATGTGTCAATCCTGGCATCAAACCACG 14764372 Query 18235 tttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGC 18294 ||| || ||||||||||| || || || || ||||||||| ||||| ||||| || Sbjct 14764371 TTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAAGAAGATACCTTCAACAGCTGC 14764312 Query 18295 GAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT-ATCCATTTTTGTGCCC 18353 || || || | || ||| ||||| | || || |||| |||||| || |||| Sbjct 14764311 AAAAGCAATAACTCGTTCTCCAAAAGTAGCATTCTTA-TCAGCGATCCATCTTAAAGCCC 14764253 Query 18354 ATTCTCCTTNNNNNNNNATACACGGTATACTC-TCTATAGCATTAAACAAAT-CATCTTT 18411 | || ||| ||| | || | |||| |||| ||||||||| | | ||| || Sbjct 14764252 AATCAGCTTTTTTTCTGATAAATGGAA-ACTCATCTAAAGCATTAAAAAGTTTCATTCTT 14764194 Query 18412 T--TCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATG 18469 | || ||| || |||||| || ||||| | |||||||| ||| || || Sbjct 14764193 TCGTCATTG---TCACGTATATAGGTTTCGATAAGTTTTGAATACATCTCACTGTGAATA 14764137 Query 18470 CTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTA 18529 ||||||| || || || |||| ||| || | | ||||||||| ||||| || || Sbjct 14764136 TTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCTCGGGAATTTGAACTTCTTTA 14764077 Query 18530 TAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAA 18589 ||||||| || ||||||||||||||||| ||||| |||| || || || || || || Sbjct 14764076 GAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAGAAGCGGCAAAGAAAGCTAAG 14764017 Query 18590 ACA 18592 ||| Sbjct 14764016 ACA 14764014 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || || || || ||||||||||| | ||||| ||| |||| Sbjct 10682742 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCTTCT 10682801 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| || || |||||||| ||||| || |||||||| ||| Sbjct 10682802 GACACCATTGACAATGTCAAATCAAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAA 10682861 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| || || || || |||||| |||||| | || ||||| ||| Sbjct 10682862 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAAT 10682921 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || ||||| ||||| Sbjct 10682922 ATCCAAAAAGAGTCAACTCTTCACTTAGT 10682950 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || || || || ||||||||||| | ||||| ||| ||| Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10681889 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| ||| ||||| |||||||| ||||| || |||||||| ||| Sbjct 10681890 GACACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAA 10681949 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| || || || || |||||| || ||| | || ||||| || Sbjct 10681950 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAAC 10682009 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || ||||| ||||| Sbjct 10682010 ATTCAAAAAGAGTCAACTCTTCACTTAGT 10682038 Score = 132 bits (146), Expect = 7e-26 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || || || || ||||||||||| | ||||| ||| ||| Sbjct 10682286 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10682345 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || || || |||||||| ||||| || |||||||| ||| Sbjct 10682346 GACACTATTGACAACGTTAAGTCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 10682405 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| || | |||||| || || || |||||| |||||| | || || || | Sbjct 10682406 CAAAGATTAATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACA-- 10682463 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 ||||||||| ||| | || ||||| ||||| Sbjct 10682464 ATATCCAAAAGGAGTCAACTCTTCACTTAGT 10682494 Score = 129 bits (142), Expect = 9e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || || || || ||||| ||||| | ||||| ||| ||| Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCT 10683257 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || ||| || || |||||||| ||||| || |||||||| ||| Sbjct 10683258 GACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCAA 10683317 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| |||||| ||||| || || ||| ||||| | || ||||| || Sbjct 10683318 CAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAAC 10683377 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || |||||||| || Sbjct 10683378 ATTCAAAAAGAGTCAACTCTTCATTTGGT 10683406 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || || || ||||| |||||||| | ||||| ||| || Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||| |||||||| ||||| || || ||||| ||| Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAA 10682177 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | |||||| || || || |||||| |||||| | || || || ||| Sbjct 10682178 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682237 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || |||||||| || Sbjct 10682238 ATCCAAAAAGAATCTACTCTTCATTTGGT 10682266 Score = 118 bits (130), Expect = 2e-21 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || || || ||||| |||||||| | ||||| ||| || Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| || || ||||| || ||||| || |||||||| ||| Sbjct 10683030 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 10683089 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | |||||| || || || |||||| |||||| | || || |||| Sbjct 10683090 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATA-- 10683147 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 ||||||||| || | || |||||||| || Sbjct 10683148 ATATCCAAAAGGAATCAACTCTTCATTTGGT 10683178 Score = 105 bits (116), Expect = 1e-17 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || ||||||||||| || || || | || || ||| || Sbjct 10682514 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCC 10682573 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| || || ||||| |||||||| || |||||||| ||| Sbjct 10682574 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10682633 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| || || || || |||||| |||||| | || || |||| Sbjct 10682634 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATA-- 10682691 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 ||||||||| || | || || ||||| || Sbjct 10682692 ATATCCAAAAGGAATCAACTCTCCATTTGGT 10682722 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| ||||||| || ||||||||||| || || | || || |||| || Sbjct 14587457 AATGCAAATTTTTGTTAAAACTTTAACTGGAAAAACAATAACTCTTGAGGTTGAAGCCTC 14587516 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || || || |||| ||| || || || |||||||| || || ||||| || Sbjct 14587517 AGATACAGTTGATAATGTTAAAACTAAGATTCATGAAAAAGAAGGTATCCCACCAGACCA 14587576 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 |||| | | || | |||||||| Sbjct 14587577 ACAACGGCTTATATTTGCCGGTA 14587599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870764966000