Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq2 185 1e-41
>seq2
Length=16759152
Score = 185 bits (204), Expect = 1e-41
Identities = 484/723 (67%), Gaps = 21/723 (3%)
Strand=Plus/Minus
Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGA--TATTAAATTCATAAAATCAA 17936
||||||||||| ||||||||||| ||||| || | ||| |||||| |||||||||||
Sbjct 14764724 ACTTTTTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAATATTAAC--CATAAAATCAA 14764667
Query 17937 ATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAA-TTCGTATAATAATCTATCTGCT 17995
| || || | |||||| | |||| ||||| ||| || || || |||
Sbjct 14764666 AGGGGTTCTTAACATTATAA-AGTTTTGAACAATTAAGTTCCACCAACAAATGGTCAGCT 14764608
Query 17996 ACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA-AGGTAG 18054
||| |||| | |||| |||| ||| | ||||| || | | | | || ||| ||
Sbjct 14764607 ACATATTCAATATATGTACACATTAAACGTGAGTTCATTCCAATCA-TATCAACAGGAAG 14764549
Query 18055 AGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCT 18114
|||||| ||| |||| || || || ||||| | | ||| || || | | ||| |
Sbjct 14764548 AGCATCTGTAAGGTATTCCTTTTCAATATCAACTGCATTTTTAATAATTTCTTTTATACG 14764489
Query 18115 AGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTG 18174
|| | ||| || | || | || || |||| || || |||||| |||
Sbjct 14764488 TTCTTCAGATGGTTTGTTTTCAAGGTAACTA-AACATAAGG--CAGGCGAAATCACGGTG 14764432
Query 18175 TAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCt 18234
||| || |||||||| || || ||||| || | || || || ||||| | ||| |
Sbjct 14764431 TAATCCCTCATCTCTTGAAATCAATTCATTGGAATGTGTCAATCCTGGCATCAAACCACG 14764372
Query 18235 tttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGC 18294
||| || ||||||||||| || || || || ||||||||| ||||| ||||| ||
Sbjct 14764371 TTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAAGAAGATACCTTCAACAGCTGC 14764312
Query 18295 GAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT-ATCCATTTTTGTGCCC 18353
|| || || | || ||| ||||| | || || |||| |||||| || ||||
Sbjct 14764311 AAAAGCAATAACTCGTTCTCCAAAAGTAGCATTCTTA-TCAGCGATCCATCTTAAAGCCC 14764253
Query 18354 ATTCTCCTTNNNNNNNNATACACGGTATACTC-TCTATAGCATTAAACAAAT-CATCTTT 18411
| || ||| ||| | || | |||| |||| ||||||||| | | ||| ||
Sbjct 14764252 AATCAGCTTTTTTTCTGATAAATGGAA-ACTCATCTAAAGCATTAAAAAGTTTCATTCTT 14764194
Query 18412 T--TCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATG 18469
| || ||| || |||||| || ||||| | |||||||| ||| || ||
Sbjct 14764193 TCGTCATTG---TCACGTATATAGGTTTCGATAAGTTTTGAATACATCTCACTGTGAATA 14764137
Query 18470 CTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTA 18529
||||||| || || || |||| ||| || | | ||||||||| ||||| || ||
Sbjct 14764136 TTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCTCGGGAATTTGAACTTCTTTA 14764077
Query 18530 TAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAA 18589
||||||| || ||||||||||||||||| ||||| |||| || || || || || ||
Sbjct 14764076 GAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAGAAGCGGCAAAGAAAGCTAAG 14764017
Query 18590 ACA 18592
|||
Sbjct 14764016 ACA 14764014
Score = 138 bits (152), Expect = 2e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| |||| || || || || ||||||||||| | ||||| ||| ||||
Sbjct 10682742 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCTTCT 10682801
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || || ||| || || |||||||| ||||| || |||||||| |||
Sbjct 10682802 GACACCATTGACAATGTCAAATCAAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAA 10682861
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||||| |||| ||| || || || || |||||| |||||| | || ||||| |||
Sbjct 10682862 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAAT 10682921
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| |||||| | || ||||| |||||
Sbjct 10682922 ATCCAAAAAGAGTCAACTCTTCACTTAGT 10682950
Score = 134 bits (148), Expect = 2e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| |||| || || || || ||||||||||| | ||||| ||| |||
Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10681889
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||| ||| ||||| |||||||| ||||| || |||||||| |||
Sbjct 10681890 GACACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAA 10681949
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||||| |||| ||| || || || || |||||| || ||| | || ||||| ||
Sbjct 10681950 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAAC 10682009
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| |||||| | || ||||| |||||
Sbjct 10682010 ATTCAAAAAGAGTCAACTCTTCACTTAGT 10682038
Score = 132 bits (146), Expect = 7e-26
Identities = 157/211 (74%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| |||| || || || || ||||||||||| | ||||| ||| |||
Sbjct 10682286 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10682345
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| ||||| || || || |||||||| ||||| || |||||||| |||
Sbjct 10682346 GACACTATTGACAACGTTAAGTCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 10682405
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||||| || | |||||| || || || |||||| |||||| | || || || |
Sbjct 10682406 CAAAGATTAATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACA-- 10682463
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031
||||||||| ||| | || ||||| |||||
Sbjct 10682464 ATATCCAAAAGGAGTCAACTCTTCACTTAGT 10682494
Score = 129 bits (142), Expect = 9e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| |||| || || || || ||||| ||||| | ||||| ||| |||
Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCT 10683257
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| || || ||| || || |||||||| ||||| || |||||||| |||
Sbjct 10683258 GACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCAA 10683317
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||||| |||| |||||| ||||| || || ||| ||||| | || ||||| ||
Sbjct 10683318 CAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAAC 10683377
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| |||||| | || |||||||| ||
Sbjct 10683378 ATTCAAAAAGAGTCAACTCTTCATTTGGT 10683406
Score = 125 bits (138), Expect = 1e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || || || ||||| |||||||| | ||||| ||| ||
Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || || ||| ||||| |||||||| ||||| || || ||||| |||
Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAA 10682177
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||||||||| | |||||| || || || |||||| |||||| | || || || |||
Sbjct 10682178 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682237
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| ||||| | || |||||||| ||
Sbjct 10682238 ATCCAAAAAGAATCTACTCTTCATTTGGT 10682266
Score = 118 bits (130), Expect = 2e-21
Identities = 154/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || || || ||||| |||||||| | ||||| ||| ||
Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || ||| || || ||||| || ||||| || |||||||| |||
Sbjct 10683030 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 10683089
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||||||||| | |||||| || || || |||||| |||||| | || || ||||
Sbjct 10683090 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATA-- 10683147
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031
||||||||| || | || |||||||| ||
Sbjct 10683148 ATATCCAAAAGGAATCAACTCTTCATTTGGT 10683178
Score = 105 bits (116), Expect = 1e-17
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || |||| || ||||||||||| || || || | || || ||| ||
Sbjct 10682514 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCC 10682573
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || ||| || || ||||| |||||||| || |||||||| |||
Sbjct 10682574 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10682633
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||||| |||| ||| || || || || |||||| |||||| | || || ||||
Sbjct 10682634 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATA-- 10682691
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031
||||||||| || | || || ||||| ||
Sbjct 10682692 ATATCCAAAAGGAATCAACTCTCCATTTGGT 10682722
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| ||||||| || ||||||||||| || || | || || |||| ||
Sbjct 14587457 AATGCAAATTTTTGTTAAAACTTTAACTGGAAAAACAATAACTCTTGAGGTTGAAGCCTC 14587516
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|||| || || || |||| ||| || || || |||||||| || || ||||| ||
Sbjct 14587517 AGATACAGTTGATAATGTTAAAACTAAGATTCATGAAAAAGAAGGTATCCCACCAGACCA 14587576
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
|||| | | || | ||||||||
Sbjct 14587577 ACAACGGCTTATATTTGCCGGTA 14587599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731870764966000
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