Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2 168 1e-36 >seq2 Length=16759152 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| || | |||||| | || ||||| | ||| | |||||| || || |||||||| Sbjct 10683425 ACCTCCACGAAGACGGAGAACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGA 10683366 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | ||||| | |||| || | ||| || || ||||| |||||||| |||||||| || || Sbjct 10683365 AAGTGTTCTTCCATCCTCAAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGG 10683306 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| |||||||| || || ||| |||||| |||| || || | ||| || Sbjct 10683305 GATTCCTTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAAC 10683246 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| ||||||||||||||||| ||||| || |||| ||| |||||||| Sbjct 10683245 TTCAAGAGTAATGGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | |||||| | ||||| || | ||| | ||| || |||||| || ||| Sbjct 10682515 ATACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCA 10682456 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | |||||| || |||||||||||||| |||||||| || Sbjct 10682455 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGA 10682396 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || || || || || |||| || || | ||| Sbjct 10682395 GGAATTCCTTCCTTATCTTGAATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCA 10682336 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||| |||||||| ||||| || |||| ||| |||||||| Sbjct 10682335 ACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682286 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | |||||| | || ||||| | ||| | || || ||||||||| ||| Sbjct 10682743 ATACCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCA 10682684 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | |||||| |||||||| |||||||| |||||||| || Sbjct 10682683 GAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGA 10682624 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || || ||| ||||| || | || || | |||| Sbjct 10682623 GGAATTCCTTCTTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCT 10682564 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || ||||| || || |||| || |||||||| Sbjct 10682563 ACCTCGAGAGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514 Score = 149 bits (164), Expect = 1e-30 Identities = 452/695 (65%), Gaps = 17/695 (2%) Strand=Plus/Minus Query 49582 ATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA-T 49640 ||||||| |||||||||||| || || || ||||||| | |||| | || || | Sbjct 14764685 ATATTAAC--CATAAAATCAAAGGGGTTCTTAACATTATAA-AGTTTTGAACAATTAAGT 14764629 Query 49641 ACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATA 49700 | || || || |||||| |||||| |||| ||||||| | ||||| Sbjct 14764628 TCCACCAACAAATGGTCAGCTACATATTCAATATATGTACACATTAAACGTGAGTTCATT 14764569 Query 49701 CCCAATAATTTAAATGGTAAT-GCATCATCAATAAATTCtttttctatttctacagcttg 49759 || ||| || | || | || ||||| || |||| ||||| || || || || | Sbjct 14764568 CC-AATCATATCAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCAACTGCATT 14764510 Query 49760 tttaattatcataattatattattttttgataatttatatttaatatgattcgcatatat 49819 |||||| || ||||| | || ||| ||| | || || | | | | | || Sbjct 14764509 TTTAATAATTTCTTTTATACGTTCTTCAGATGGTTTGTTTTCAAGGTAACT---AAACAT 14764453 Query 49820 taaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 | || || |||||| ||||| ||||| || || || || |||||||| | || Sbjct 14764452 AAGGCAGGCGAAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGAATGTGT 14764393 Query 49880 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 49939 ||||||||||| || || | || || ||||||||||| || ||||| || |||||| Sbjct 14764392 CAATCCTGGCATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAA 14764333 Query 49940 GAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA--AT--TTAT 49995 ||| ||||| || ||| ||||| || || | || | ||||||| | || || |||| Sbjct 14764332 GAAGATACCTTCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAA-AGTAGCATTCTTAT 14764274 Query 49996 CATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTA 50055 || | ||||| ||| ||||||||| ||||||||| ||||| | || | | |||| Sbjct 14764273 CAGC---GATCCATCTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTA 14764217 Query 50056 TAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAG 50115 ||| ||||| | || || |||| | || | | | Sbjct 14764216 AAGCATTAAAAAGTTTCATTCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGTTTTG 14764157 Query 50116 AATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTT 50175 ||||||| ||| || | | |||||| || ||||| || ||| || | ||| | Sbjct 14764156 AATACATCTCACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCT 14764097 Query 50176 CTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAG 50235 | | | |||||||| | | |||| || || ||||||||| ||||||||||||| Sbjct 14764096 CGGGAATTTGAACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAG 14764037 Query 50236 ATGCTGCGAAGAATGCTAAAACGTATTTAATAAAA 50270 | || || ||||| ||||| || | ||||||| Sbjct 14764036 AAGCGGCAAAGAAAGCTAAGACACGTGAAATAAAA 14764002 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | |||||| | || ||||| | ||| | || || ||||||||| ||| Sbjct 10681831 ATACCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCA 10681772 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | |||||| |||||||| ||||||||||||||||| || Sbjct 10681771 GAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGA 10681712 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || || || ||||| |||| || || | ||| Sbjct 10681711 GGAATTCCTTCTTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCT 10681652 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || ||||| || || || || |||| || || ||||| Sbjct 10681651 ACCTCAAGAGTGATAGTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||| ||||| || | | ||||| || ||||| ||||||||||| ||||| ||||| Sbjct 15965449 TACCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGG 15965390 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| || | ||||| | || || || ||||| ||||| |||||||| | Sbjct 15965389 CTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAA 15965330 Query 192515 ATGTTTTAATAAATATCTGCATTT 192538 || |||| || |||||||||| Sbjct 15965329 GAGTCTTAACGAAAATCTGCATTT 15965306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984478297157250