Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 167 4e-36 >seq2 Length=16759152 Score = 167 bits (184), Expect = 4e-36 Identities = 403/593 (68%), Gaps = 24/593 (4%) Strand=Plus/Minus Query 38787 GCATCTAAGGTAAAAAT---TGCATTATCACTATTCATCACATTGTATTTTTGGTATTCA 38843 ||||| || ||||||| | | | ||| || ||| ||| | |||| || |||||| Sbjct 14764787 GCATCCAATGTAAAAACACGTTCTTCATCTGTAGACATAACACCGAATTTCTGATATTCA 14764728 Query 38844 GAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGA--TATTAAATTCATAAAAT 38901 ||||||||||| || || || ||||||||||| || | ||| |||||| |||||||| Sbjct 14764727 GAAACTTTTTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAATATTAAC--CATAAAAT 14764670 Query 38902 CAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA-TACATATAATAATCTATCG 38960 |||| || || || ||||||| | |||| | || || | | || || || Sbjct 14764669 CAAAGGGGTTCTTAACATTATAA-AGTTTTGAACAATTAAGTTCCACCAACAAATGGTCA 14764611 Query 38961 GCCACAAATTCAACATATTGTA-ACATTAATTCACAATTCATACCCAATAATTTAAATGG 39019 || ||| |||||| |||| ||| ||||||| | ||||| || ||| || | || | Sbjct 14764610 GCTACATATTCAATATAT-GTACACATTAAACGTGAGTTCATTCC-AATCATATCAACAG 14764553 Query 39020 TAAT-GCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataatta 39078 || ||||| || |||| ||||| || || || || | |||||| || ||| Sbjct 14764552 GAAGAGCATCTGTAAGGTATTCCTTTTCAATATCAACTGCATTTTTAATAATTTCTTTTA 14764493 Query 39079 tattattttttgataatttatatttaatatgattcgcatataGTAAACATGCAAAATCCG 39138 || | || ||| ||| | || || | | | | ||| | || || ||||| Sbjct 14764492 TACGTTCTTCAGATGGTTTGTTTTCAAGGTAACTAA-ACATA--AGGCAGGCGAAATCAC 14764436 Query 39139 TATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATC 39198 ||||| || || || || || || |||||||| | || ||||||||||| || | Sbjct 14764435 GGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGAATGTGTCAATCCTGGCATCAAAC 14764376 Query 39199 CTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACAC 39258 | | || || ||||||||||| || ||||| || ||||||||| ||||| || ||| Sbjct 14764375 CACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAAGAAGATACCTTCAACAG 14764316 Query 39259 ACGCAAATGCTATTATTCTTGCTCCAAACATTA--AT--TTATCATCTAAAATCCAATTT 39314 ||||| || || | || | ||||||| | || || |||||| | ||||| || Sbjct 14764315 CTGCAAAAGCAATAACTCGTTCTCCAAA-AGTAGCATTCTTATCAGC---GATCCATCTT 14764260 Query 39315 ATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 | |||||||| ||||||||| ||||| | || | | |||| ||| ||||| Sbjct 14764259 AAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTAAAGCATTAAA 14764207 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | ||||| || | ||| | |||||| ||| || ||||| Sbjct 10682059 ATACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCA 10682000 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || | | | || || | |||||| ||||||||||||||||| |||||||| || Sbjct 10681999 GAAAGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGA 10681940 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| ||||| ||| || || ||||| || || | ||| Sbjct 10681939 GGGATTCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCA 10681880 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||| |||||||| ||||| || |||| || |||||||| Sbjct 10681879 ACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | ||||| || | ||| | |||||| ||||| ||||| Sbjct 10682971 ATACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCA 10682912 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || | |||||| ||||||||||||||||| |||||||| || Sbjct 10682911 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGA 10682852 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| || || ||| ||||| || || || || | ||| Sbjct 10682851 GGAATTCCTTCCTTATCTTGGATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCA 10682792 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||| |||||||| ||||| || |||| || |||||||| Sbjct 10682791 ACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| || | ||| || | || ||||| | ||| | |||||| ||| || ||||| || Sbjct 10683425 ACCTCCACGAAGACGGAGAACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGA 10683366 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | | || || | ||| || || |||||||||||||| ||||| || || || Sbjct 10683365 AAGTGTTCTTCCATCCTCAAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGG 10683306 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| |||||||| || || ||| |||||| ||||| || || | ||| || Sbjct 10683305 GATTCCTTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAAC 10683246 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| ||||||||||||||||| ||||| || |||| || |||||||| Sbjct 10683245 TTCAAGAGTAATGGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || ||||| | ||| | || || |||||||| || Sbjct 10682743 ATACCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCA 10682684 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || | |||||| ||||||||||||||||| ||||| || || Sbjct 10682683 GAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGA 10682624 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || || ||| ||||| || || || || | |||| Sbjct 10682623 GGAATTCCTTCTTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCT 10682564 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || ||||| || || |||| ||| |||||||| Sbjct 10682563 ACCTCGAGAGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || ||||| | ||| | || || |||||||| || Sbjct 10681831 ATACCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCA 10681772 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || | |||||| ||||||||||||||||||||||| || || Sbjct 10681771 GAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGA 10681712 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || || || ||||| ||||| || || | ||| Sbjct 10681711 GGAATTCCTTCTTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCT 10681652 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||| || || || || |||| ||| || ||||| Sbjct 10681651 ACCTCAAGAGTGATAGTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| | | |||||||| ||||| ||||||||||| ||||| ||||| Sbjct 15965449 TACCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGG 15965390 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| || || ||||| | || || || ||||| ||||| |||||||| | Sbjct 15965389 CTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAA 15965330 Query 172048 ATGTTTTAATGAATATCTGCATTT 172071 || |||| ||| |||||||||| Sbjct 15965329 GAGTCTTAACGAAAATCTGCATTT 15965306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905134472583000