Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq2 167 4e-36
>seq2
Length=16759152
Score = 167 bits (184), Expect = 4e-36
Identities = 403/593 (68%), Gaps = 24/593 (4%)
Strand=Plus/Minus
Query 38787 GCATCTAAGGTAAAAAT---TGCATTATCACTATTCATCACATTGTATTTTTGGTATTCA 38843
||||| || ||||||| | | | ||| || ||| ||| | |||| || ||||||
Sbjct 14764787 GCATCCAATGTAAAAACACGTTCTTCATCTGTAGACATAACACCGAATTTCTGATATTCA 14764728
Query 38844 GAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGA--TATTAAATTCATAAAAT 38901
||||||||||| || || || ||||||||||| || | ||| |||||| ||||||||
Sbjct 14764727 GAAACTTTTTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAATATTAAC--CATAAAAT 14764670
Query 38902 CAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA-TACATATAATAATCTATCG 38960
|||| || || || ||||||| | |||| | || || | | || || ||
Sbjct 14764669 CAAAGGGGTTCTTAACATTATAA-AGTTTTGAACAATTAAGTTCCACCAACAAATGGTCA 14764611
Query 38961 GCCACAAATTCAACATATTGTA-ACATTAATTCACAATTCATACCCAATAATTTAAATGG 39019
|| ||| |||||| |||| ||| ||||||| | ||||| || ||| || | || |
Sbjct 14764610 GCTACATATTCAATATAT-GTACACATTAAACGTGAGTTCATTCC-AATCATATCAACAG 14764553
Query 39020 TAAT-GCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataatta 39078
|| ||||| || |||| ||||| || || || || | |||||| || |||
Sbjct 14764552 GAAGAGCATCTGTAAGGTATTCCTTTTCAATATCAACTGCATTTTTAATAATTTCTTTTA 14764493
Query 39079 tattattttttgataatttatatttaatatgattcgcatataGTAAACATGCAAAATCCG 39138
|| | || ||| ||| | || || | | | | ||| | || || |||||
Sbjct 14764492 TACGTTCTTCAGATGGTTTGTTTTCAAGGTAACTAA-ACATA--AGGCAGGCGAAATCAC 14764436
Query 39139 TATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATC 39198
||||| || || || || || || |||||||| | || ||||||||||| || |
Sbjct 14764435 GGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGAATGTGTCAATCCTGGCATCAAAC 14764376
Query 39199 CTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACAC 39258
| | || || ||||||||||| || ||||| || ||||||||| ||||| || |||
Sbjct 14764375 CACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAAGAAGATACCTTCAACAG 14764316
Query 39259 ACGCAAATGCTATTATTCTTGCTCCAAACATTA--AT--TTATCATCTAAAATCCAATTT 39314
||||| || || | || | ||||||| | || || |||||| | ||||| ||
Sbjct 14764315 CTGCAAAAGCAATAACTCGTTCTCCAAA-AGTAGCATTCTTATCAGC---GATCCATCTT 14764260
Query 39315 ATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367
| |||||||| ||||||||| ||||| | || | | |||| ||| |||||
Sbjct 14764259 AAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTAAAGCATTAAA 14764207
Score = 158 bits (174), Expect = 2e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||| || | ||| || | ||||| || | ||| | |||||| ||| || |||||
Sbjct 10682059 ATACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCA 10682000
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || | | | || || | |||||| ||||||||||||||||| |||||||| ||
Sbjct 10681999 GAAAGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGA 10681940
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| |||||||| |||||||| ||||| ||| || || ||||| || || | |||
Sbjct 10681939 GGGATTCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCA 10681880
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| |||||||| |||||||| ||||| || |||| || ||||||||
Sbjct 10681879 ACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830
Score = 158 bits (174), Expect = 2e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||| || | ||| || | ||||| || | ||| | |||||| ||||| |||||
Sbjct 10682971 ATACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCA 10682912
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || || | | || || | |||||| ||||||||||||||||| |||||||| ||
Sbjct 10682911 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGA 10682852
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| |||||||| |||||||| || || ||| ||||| || || || || | |||
Sbjct 10682851 GGAATTCCTTCCTTATCTTGGATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCA 10682792
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| |||||||| |||||||| ||||| || |||| || ||||||||
Sbjct 10682791 ACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742
Score = 150 bits (166), Expect = 3e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901
||| || | ||| || | || ||||| | ||| | |||||| ||| || ||||| ||
Sbjct 10683425 ACCTCCACGAAGACGGAGAACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGA 10683366
Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961
| | || | | || || | ||| || || |||||||||||||| ||||| || || ||
Sbjct 10683365 AAGTGTTCTTCCATCCTCAAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGG 10683306
Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021
|||||||| |||||||| || || ||| |||||| ||||| || || | ||| ||
Sbjct 10683305 GATTCCTTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAAC 10683246
Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||| ||||||||||||||||| ||||| || |||| || ||||||||
Sbjct 10683245 TTCAAGAGTAATGGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198
Score = 140 bits (154), Expect = 6e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||| || | ||| || | || ||||| | ||| | || || |||||||| ||
Sbjct 10682743 ATACCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCA 10682684
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || || | | || || | |||||| ||||||||||||||||| ||||| || ||
Sbjct 10682683 GAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGA 10682624
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||||||||| ||||| || || ||| ||||| || || || || | ||||
Sbjct 10682623 GGAATTCCTTCTTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCT 10682564
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||| ||||| || ||||| || || |||| ||| ||||||||
Sbjct 10682563 ACCTCGAGAGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||| || | ||| || | || ||||| | ||| | || || |||||||| ||
Sbjct 10681831 ATACCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCA 10681772
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || || | | || || | |||||| ||||||||||||||||||||||| || ||
Sbjct 10681771 GAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGA 10681712
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||||||||| ||||| || || || ||||| ||||| || || | |||
Sbjct 10681711 GGAATTCCTTCTTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCT 10681652
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||| || ||||| || || || || |||| ||| || |||||
Sbjct 10681651 ACCTCAAGAGTGATAGTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602
Score = 111 bits (122), Expect = 3e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||| |||||||| | | |||||||| ||||| ||||||||||| ||||| |||||
Sbjct 15965449 TACCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGG 15965390
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| || || ||||| | || || || ||||| ||||| |||||||| |
Sbjct 15965389 CTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAA 15965330
Query 172048 ATGTTTTAATGAATATCTGCATTT 172071
|| |||| ||| ||||||||||
Sbjct 15965329 GAGTCTTAACGAAAATCTGCATTT 15965306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905134472583000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |