Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq2 129 7e-25 >seq2 Length=16759152 Score = 129 bits (142), Expect = 7e-25 Identities = 364/555 (66%), Gaps = 13/555 (2%) Strand=Plus/Minus Query 172428 ACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTTGGAATGATAATGGTTCTCGT 172487 ||| || |||| |||||| || || || |||||| ||||| | | || || | | Sbjct 13736330 ACTAATGCAAAGGAATTAAGTGCTAGGGGGGTTAAAATTTGGGAAGCAAACGGAAGTAGA 13736271 Query 172488 GAATTTTTAGATTTATGCGGGTTTACTGAAAGAAAAGAAGGTGATTTAGGCCCAATTTAT 172547 || ||| | ||| || |||||||||||| ||||||| ||||| || || ||||| Sbjct 13736270 GAGTTTCTCGATAATCTTGGATTTACTGAAAGACAAGAAGGCGATTTGGGACCTGTTTAT 13736211 Query 172548 GGATTTCAATGGAGACATGCAGGGGCTCAATATATCGACTGTGATACAGATTACACAGGA 172607 || ||||||||||||||| || ||| ||| | | | ||| | ||||| | ||| Sbjct 13736210 GGTTTTCAATGGAGACATTTTGGAGCTACATACAAAGGCGTTGACGCCGATTATAGAGGT 13736151 Query 172608 CAAGGAGTGGACCAATTAAGTCAAACTATTAATACTTTACAAAACAACCC---AGAAAGT 172664 ||||| | || ||||| ||| ||| || || | | ||| || ||| Sbjct 13736150 GAAGGAATTGATCAATTGGCCCAAGTAATTGATCAAATAAAGACCAATCCTTTTTCAAGA 13736091 Query 172665 AGAAGGATGTTAATTGATAGTTGGAATGTACCTCAACTTGATAAAATGGTTCTTCCTCCT 172724 |||| || ||| || |||||| | || | ||||||||||||||| | ||||| Sbjct 13736090 AGAATTATTTTATCTG---CATGGAATCCATCTGATCTTGATAAAATGGTTTTGCCTCCA 13736034 Query 172725 TGCCATACTTTAGCACAATTTTATGTCAGaaaaaaaTCAATCTTAGATTGTCAGTTATAT 172784 || ||||||||||| ||||||||||| || | | ||| ||| || || ||| Sbjct 13736033 TGTCATACTTTAGCTCAATTTTATGT---TCAAGATGGAGAATTAAGTTGCCATTTGTAT 13735977 Query 172785 CAAAGATCAGCTGATTTAGGATTGGGGGTACCTTATAATATTGGATTTTATTCATTTTTA 172844 ||| | | ||| | || | || || || | ||| |||| | || || ||||| Sbjct 13735976 CAACGTAGTGGGGATGTTGGTCTTGGTGTTCCATTTAACATTGCTTCATACTCTCTTTTA 13735917 Query 172845 ATACTTGTGTTAAGTAAA--TGGTGCAATTTAACTCCAGGAAAGTTTATTCATACTTTTG 172902 | | | || | ||| | ||| || || || |||| | ||| |||| ||| ||| Sbjct 13735916 ACTCATATGATTGCAAAAGTTTGTGGAA--TAGCTACAGGTGAATTTGTTCACACTATTG 13735859 Query 172903 GAGATGTTCACGTGTATTCAAATCATGTTGAACCTTTAAAGGTTCAATTAAAAAGAAAAC 172962 |||||| ||| | || |||||| |||| | | || ||||||||| | ||| Sbjct 13735858 GAGATGCTCATATATACAAAAATCACATTGATGCACTTAAACTTCAATTAACTCGTGAAC 13735799 Query 172963 CATATACTTTTCCAA 172977 | ||| ||||||| Sbjct 13735798 CTTATCAATTTCCAA 13735784 Score = 93.3 bits (102), Expect = 5e-14 Identities = 180/257 (70%), Gaps = 18/257 (7%) Strand=Plus/Minus Query 194590 ATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCAT 194649 |||| | | || |||| |||||| || | ||||| |||||| |||||| |||||| Sbjct 5488677 ATTTATTTTGGACCAATTTATTATCAAAAGTTAAAACATATGGTTTTGGATAAGATGCAT 5488618 Query 194650 GCTAGAAGTCATGGGCA--AGTAAC--TACTTTACATCGACAACCAAATTGTGGTCGTTC 194705 |||||| ||| | | | ||| | || || ||| || ||||||| ||| | | Sbjct 5488617 GCTAGA--TCAAGAGGACCAGTTGCCGTA-TTGACA-CGTCAACCAACAGAGGGTAGAGC 5488562 Query 194706 TCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGC 194765 || | ||| ||||||||||| ||||||||||||| ||| ||| || ||| |||| || Sbjct 5488561 TCGTGATGGTGGTTTAAGATTAGGAGAAATGGAAAGAGATTGTCTTATAGCATATGGAGC 5488502 Query 194766 TACTCAATTCT-TAAATGAAA----GAATGTTTTTGTATTCTGATCCTTTTCAAGTCGAT 194820 ||||| || | |||| || |||| || | |||||||| |||||||| ||| Sbjct 5488501 --ATCAATGCTATTAATGGAACGGTTAATGGTT---TCTTCTGATCAATTTCAAGTTGAT 5488447 Query 194821 GTTTGCACAGAATGTGG 194837 || || | | |||||| Sbjct 5488446 GTATGTTCTGTATGTGG 5488430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632488532673800