Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 >seq2 Length=16759152 Score = 104 bits (114), Expect = 2e-17 Identities = 214/316 (68%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 ||||| || || ||||| | ||| | ||||| || | ||| ||||||||||| || Sbjct 13252447 GTCTCAGGATTATCACAACTAGCACAAAGAACAAATTTTCTGATAAAACCATCAAGAAGA 13252388 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440 | ||||| || | || || || ||||| || | || || || || ||| Sbjct 13252387 TTTTGTAATTTTGTTGCATCATGATCACCATTGACAATATAACGATCATTCTTAGTATCA 13252328 Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGT 34500 | | ||||| || || || || || || ||||| ||||| || || || | || | Sbjct 13252327 AAATTGGTTTGAGCTCCTAGTTCACAGCCAAAGTATTTTGTTGGATACATTGGTGGTCTC 13252268 Query 34501 CCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTT 34560 | || ||||| || ||||| ||| || | ||||| |||||||| || || || || Sbjct 13252267 TCTAGAGCCTTAGCAATTTCAACCATATTAGCTATGACTGTCTTGATTCCATTACCTTTA 13252208 Query 34561 CCTTCGACCTTGGCGCAGATGCG-CGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATT 34619 ||||| || || || || || |||||||||||| |||||| | | || ||||||| Sbjct 13252207 CCTTCAACTTTAGCTT-GAAGCTTCGGCATTTTGTAACGGTAGTATGGATCAACCACATT 13252149 Query 34620 GCGGTTAACGTTCACA 34635 || ||||| || ||| Sbjct 13252148 ACGATTAACATTTACA 13252133 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || ||||| || ||||||||||| | ||| || || Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCT 10683257 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | || ||| |||||| || || ||||| | || |||||| Sbjct 10683258 GACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCAA 10683317 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| ||| || || || || ||||||| |||||| | | ||||||||| Sbjct 10683318 CAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAAC 10683377 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||||||||| || || Sbjct 10683378 ATTCAAAAAGAGTCAAC 10683394 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| |||||||| || || || ||||| | ||| || || | Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || ||| || ||| || || ||||| | || |||||| Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAA 10682177 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | ||| || ||||| || || |||| ||||| | | || ||||| Sbjct 10682178 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682237 Query 110453 ATTCAAAAAGAATCTAC 110469 || |||||||||||||| Sbjct 10682238 ATCCAAAAAGAATCTAC 10682254 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| |||||||| || || || ||||| | ||| || || | Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || ||| |||||| ||||| ||||| | || |||||| Sbjct 10683030 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 10683089 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | ||| || ||||| || || |||| ||||| | | || || || Sbjct 10683090 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10683149 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||| ||||| || Sbjct 10683150 ATCCAAAAGGAATCAAC 10683166 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || || ||||| || |||||||| || || | || |||||| | Sbjct 10681602 ATGCAAATTTTCGTTAAGACTTTGACAGGCAAAACTATCACTCTTGAGGTAGAGCCTTCC 10681661 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || |||||| ||||||||||| | || |||||| Sbjct 10681662 GACACTATTGACAATGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10681721 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | |||| ||| || ||||| || || |||| ||||| | | || || || Sbjct 10681722 CAGAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10681781 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||| ||||| || Sbjct 10681782 ATCCAAAAGGAATCAAC 10681798 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || ||||| || ||||| ||||| | ||| || || Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10681889 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | | || ||| || ||| || || ||||| | || || ||| Sbjct 10681890 GACACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAA 10681949 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| ||| || ||||| || || |||| || || | | ||||||||| Sbjct 10681950 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAAC 10682009 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||||||||| || || Sbjct 10682010 ATTCAAAAAGAGTCAAC 10682026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412840920746555