Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq2 104 2e-17
>seq2
Length=16759152
Score = 104 bits (114), Expect = 2e-17
Identities = 214/316 (68%), Gaps = 2/316 (1%)
Strand=Plus/Minus
Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380
||||| || || ||||| | ||| | ||||| || | ||| ||||||||||| ||
Sbjct 13252447 GTCTCAGGATTATCACAACTAGCACAAAGAACAAATTTTCTGATAAAACCATCAAGAAGA 13252388
Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440
| ||||| || | || || || ||||| || | || || || || |||
Sbjct 13252387 TTTTGTAATTTTGTTGCATCATGATCACCATTGACAATATAACGATCATTCTTAGTATCA 13252328
Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGT 34500
| | ||||| || || || || || || ||||| ||||| || || || | || |
Sbjct 13252327 AAATTGGTTTGAGCTCCTAGTTCACAGCCAAAGTATTTTGTTGGATACATTGGTGGTCTC 13252268
Query 34501 CCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTT 34560
| || ||||| || ||||| ||| || | ||||| |||||||| || || || ||
Sbjct 13252267 TCTAGAGCCTTAGCAATTTCAACCATATTAGCTATGACTGTCTTGATTCCATTACCTTTA 13252208
Query 34561 CCTTCGACCTTGGCGCAGATGCG-CGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATT 34619
||||| || || || || || |||||||||||| |||||| | | || |||||||
Sbjct 13252207 CCTTCAACTTTAGCTT-GAAGCTTCGGCATTTTGTAACGGTAGTATGGATCAACCACATT 13252149
Query 34620 GCGGTTAACGTTCACA 34635
|| ||||| || |||
Sbjct 13252148 ACGATTAACATTTACA 13252133
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || ||||| || || ||||| || ||||||||||| | ||| || ||
Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCT 10683257
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| ||| | | | || ||| |||||| || || ||||| | || ||||||
Sbjct 10683258 GACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCAA 10683317
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|||||| | |||| ||| || || || || ||||||| |||||| | | |||||||||
Sbjct 10683318 CAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAAC 10683377
Query 110453 ATTCAAAAAGAATCTAC 110469
||||||||||| || ||
Sbjct 10683378 ATTCAAAAAGAGTCAAC 10683394
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| |||||||| |||||||| || || || ||||| | ||| || || |
Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | | || ||| || ||| || || ||||| | || ||||||
Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAA 10682177
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|||||| | || | ||| || ||||| || || |||| ||||| | | || |||||
Sbjct 10682178 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682237
Query 110453 ATTCAAAAAGAATCTAC 110469
|| ||||||||||||||
Sbjct 10682238 ATCCAAAAAGAATCTAC 10682254
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| |||||||| |||||||| || || || ||||| | ||| || || |
Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | | || ||| |||||| ||||| ||||| | || ||||||
Sbjct 10683030 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 10683089
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|||||| | || | ||| || ||||| || || |||| ||||| | | || || ||
Sbjct 10683090 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10683149
Query 110453 ATTCAAAAAGAATCTAC 110469
|| ||||| ||||| ||
Sbjct 10683150 ATCCAAAAGGAATCAAC 10683166
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || || || ||||| || |||||||| || || | || |||||| |
Sbjct 10681602 ATGCAAATTTTCGTTAAGACTTTGACAGGCAAAACTATCACTCTTGAGGTAGAGCCTTCC 10681661
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| ||| | | | | || || |||||| ||||||||||| | || ||||||
Sbjct 10681662 GACACTATTGACAATGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10681721
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| ||| | |||| ||| || ||||| || || |||| ||||| | | || || ||
Sbjct 10681722 CAGAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10681781
Query 110453 ATTCAAAAAGAATCTAC 110469
|| ||||| ||||| ||
Sbjct 10681782 ATCCAAAAGGAATCAAC 10681798
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || ||||| || || ||||| || ||||| ||||| | ||| || ||
Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10681889
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| ||| ||| | | || ||| || ||| || || ||||| | || || |||
Sbjct 10681890 GACACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAA 10681949
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|||||| | |||| ||| || ||||| || || |||| || || | | |||||||||
Sbjct 10681950 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAAC 10682009
Query 110453 ATTCAAAAAGAATCTAC 110469
||||||||||| || ||
Sbjct 10682010 ATTCAAAAAGAGTCAAC 10682026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412840920746555
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |