Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 4e-13 >seq2 Length=16759152 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || |||||||| ||||||||||| | ||| || | Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCT 10683257 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | || ||| ||||||| ||||| ||||| | || ||||| Sbjct 10683258 GACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCAA 10683317 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | |||| ||| || || || || ||||| | | |||| | | || |||||| Sbjct 10683318 CAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAAC 10683377 Query 107736 ATTCAAAAGGAGTCTAC 107752 |||||||| ||||| || Sbjct 10683378 ATTCAAAAAGAGTCAAC 10683394 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| || || ||||| ||||||||||| || || | || ||| || | Sbjct 10681602 ATGCAAATTTTCGTTAAGACTTTGACAGGCAAAACTATCACTCTTGAGGTAGAGCCTTCC 10681661 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | | || || ||||||| || |||||||| | || ||||| Sbjct 10681662 GACACTATTGACAATGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10681721 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | |||| ||| || ||||| || || || | | ||| | | ||||| || Sbjct 10681722 CAGAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10681781 Query 107736 ATTCAAAAGGAGTCTAC 107752 || |||||||| || || Sbjct 10681782 ATCCAAAAGGAATCAAC 10681798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876143723015