Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq2 145 1e-29
>seq2
Length=16759152
Score = 145 bits (160), Expect = 1e-29
Identities = 157/208 (75%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | || || ||||||||||| || |||||| |||| ||||||| ||
Sbjct 10682059 TGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCCG 10682118
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||| ||| ||||| ||| ||| ||||| |||||||| |||||||
Sbjct 10682119 ACACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAAC 10682178
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | || ||||| || |||||| | || ||| ||||| | | || || ||||
Sbjct 10682179 AAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAATA 10682238
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| ||||||||||| ||| | ||||| ||
Sbjct 10682239 TCCAAAAAGAATCTACTCTTCATTTGGT 10682266
Score = 127 bits (140), Expect = 3e-24
Identities = 153/208 (74%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | || || ||||||||||| || |||||| |||| ||||||| ||
Sbjct 10682971 TGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCCG 10683030
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || || | ||||| ||| || || ||| || ||||| ||||| || |||||||
Sbjct 10683031 ACACCATCGACAATGTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAAC 10683090
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | || ||||| || |||||| | || ||| ||||| | | || |||||||
Sbjct 10683091 AAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAATA 10683150
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| ||||| ||||| ||| | ||||| ||
Sbjct 10683151 TCCAAAAGGAATCAACTCTTCATTTGGT 10683178
Score = 123 bits (136), Expect = 4e-23
Identities = 152/208 (73%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | || || || || ||||| || || ||| | || ||||||| ||
Sbjct 10682515 TGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCCG 10682574
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || || | ||||| ||| || || ||| |||||||| ||||| || |||||||
Sbjct 10682575 ACACCATCGACAATGTTAAATCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAAC 10682634
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | |||||||| || |||||| | || ||| ||||| | | || |||||||
Sbjct 10682635 AAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAATA 10682694
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| ||||| ||||| ||| ||||||| ||
Sbjct 10682695 TCCAAAAGGAATCAACTCTCCATTTGGT 10682722
Score = 118 bits (130), Expect = 2e-21
Identities = 151/208 (73%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | || || |||||||| ||||| |||||| |||| || |||| |
Sbjct 10683199 TGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCTG 10683258
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| |||||| | ||||| ||| || || ||| ||| ||||| || || || |||||||
Sbjct 10683259 ACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCAAC 10683318
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | |||||||| || || ||| | || ||| ||||| | | ||||| || |
Sbjct 10683319 AAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAACA 10683378
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| |||||||| || ||| | ||||| ||
Sbjct 10683379 TTCAAAAAGAGTCAACTCTTCATTTGGT 10683406
Score = 109 bits (120), Expect = 9e-19
Identities = 149/208 (72%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | || || |||||||| ||||| |||||| |||| || |||| |
Sbjct 10682287 TGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCTG 10682346
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| |||||| | || || || || || ||| ||| ||||| ||||| || |||||||
Sbjct 10682347 ACACTATTGACAACGTTAAGTCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAAC 10682406
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | || ||||| || |||||| | || ||| ||||| | | || || ||||
Sbjct 10682407 AAAGATTAATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAATA 10682466
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| ||||| || || ||| | || |||||
Sbjct 10682467 TCCAAAAGGAGTCAACTCTTCACTTAGT 10682494
Score = 91.5 bits (100), Expect = 2e-13
Identities = 107/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090
||||||| || | ||||| ||||| ||||||||||| ||| |||| || ||| | | |
Sbjct 14587459 TGCAAATTTTTGTTAAAACTTTAACTGGAAAAACAATAACTCTTGAGGTTGAAGCCTCA- 14587517
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
||||| || | ||||| |||| ||| || || |||||||| || ||||| || |||
Sbjct 14587518 GATACAGTTGATAATGTTAAAACTAAGATTCATGAAAAAGAAGGTATCCCACCAGACCAA 14587577
Query 146151 CAAAGACTCATTTTTGCAGGTA 146172
||| | || || ||||| ||||
Sbjct 14587578 CAACGGCTTATATTTGCCGGTA 14587599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786165073344200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |