Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_023581.1
Length=77792
Score E
Sequences producing significant alignments: (Bits) Value
seq2 86.0 3e-12
>seq2
Length=16759152
Score = 86.0 bits (94), Expect = 3e-12
Identities = 189/281 (67%), Gaps = 2/281 (1%)
Strand=Plus/Minus
Query 37891 TGGATGGAATCCACATGAAGTAGATAAGGCAGCATTGCCACCTTGTCATACATTGTTCCA 37950
|| |||||||||| ||| | ||||| | ||||| || |||||||| || ||
Sbjct 13736076 TGCATGGAATCCATCTGATCTTGATAAAATGGTTTTGCCTCCATGTCATACTTTAGCTCA 13736017
Query 37951 GTTCTTTGTAGAGAATGGAAAACTAAGCTGTCAGTTATATCAACGTAGTGCTGAT-TTCT 38009
|| | ||| | ||||| || |||| || || || ||||||||||||| ||| ||
Sbjct 13736016 ATTTTATGTTCAAGATGGAGAATTAAGTTGCCATTTGTATCAACGTAGTGGGGATGTTGG 13735957
Query 38010 TCTTAGGTGTTCCATTTAATATTGCAAGCTATGCGTTGCTTACACATATCGTAGCTGCAG 38069
|||| |||||||||||||| ||||| || | | | || ||||| | || ||
Sbjct 13735956 TCTT-GGTGTTCCATTTAACATTGCTTCATACTCTCTTTTAACTCATATGATTGCAAAAG 13735898
Query 38070 AATGTGGATTAGAAGTTGGTGAATTTGTCTGGACTGGTGGTGTAGTTCACCTGTACAGTA 38129
|||||| ||| ||||||||||| ||| ||| | | ||| | |||| |
Sbjct 13735897 TTTGTGGAATAGCTACAGGTGAATTTGTTCACACTATTGGAGATGCTCATATATACAAAA 13735838
Query 38130 ATCACCTTGAGCAAGCTAAAAAACAATTAAGTCGTCCACCT 38170
||||| |||| | |||| ||||||| |||| ||||
Sbjct 13735837 ATCACATTGATGCACTTAAACTTCAATTAACTCGTGAACCT 13735797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 248809190630455
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |