Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_023581.1 Length=77792 Score E Sequences producing significant alignments: (Bits) Value seq2 86.0 3e-12 >seq2 Length=16759152 Score = 86.0 bits (94), Expect = 3e-12 Identities = 189/281 (67%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 37891 TGGATGGAATCCACATGAAGTAGATAAGGCAGCATTGCCACCTTGTCATACATTGTTCCA 37950 || |||||||||| ||| | ||||| | ||||| || |||||||| || || Sbjct 13736076 TGCATGGAATCCATCTGATCTTGATAAAATGGTTTTGCCTCCATGTCATACTTTAGCTCA 13736017 Query 37951 GTTCTTTGTAGAGAATGGAAAACTAAGCTGTCAGTTATATCAACGTAGTGCTGAT-TTCT 38009 || | ||| | ||||| || |||| || || || ||||||||||||| ||| || Sbjct 13736016 ATTTTATGTTCAAGATGGAGAATTAAGTTGCCATTTGTATCAACGTAGTGGGGATGTTGG 13735957 Query 38010 TCTTAGGTGTTCCATTTAATATTGCAAGCTATGCGTTGCTTACACATATCGTAGCTGCAG 38069 |||| |||||||||||||| ||||| || | | | || ||||| | || || Sbjct 13735956 TCTT-GGTGTTCCATTTAACATTGCTTCATACTCTCTTTTAACTCATATGATTGCAAAAG 13735898 Query 38070 AATGTGGATTAGAAGTTGGTGAATTTGTCTGGACTGGTGGTGTAGTTCACCTGTACAGTA 38129 |||||| ||| ||||||||||| ||| ||| | | ||| | |||| | Sbjct 13735897 TTTGTGGAATAGCTACAGGTGAATTTGTTCACACTATTGGAGATGCTCATATATACAAAA 13735838 Query 38130 ATCACCTTGAGCAAGCTAAAAAACAATTAAGTCGTCCACCT 38170 ||||| |||| | |||| ||||||| |||| |||| Sbjct 13735837 ATCACATTGATGCACTTAAACTTCAATTAACTCGTGAACCT 13735797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 248809190630455