Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_023611.1
Length=198533
Score E
Sequences producing significant alignments: (Bits) Value
seq2 107 2e-18
seq13 102 1e-16
seq14 89.7 7e-13
>seq2
Length=16759152
Score = 107 bits (118), Expect = 2e-18
Identities = 221/325 (68%), Gaps = 4/325 (1%)
Strand=Plus/Minus
Query 168555 ACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTTGGAACGATAATGGTTCTCGT 168614
||| || |||| |||||| || || || |||||| ||||| | | || || | |
Sbjct 13736330 ACTAATGCAAAGGAATTAAGTGCTAGGGGGGTTAAAATTTGGGAAGCAAACGGAAGTAGA 13736271
Query 168615 GAATTTTTAGATTTATGTGGTTTTACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTAT 168674
|| ||| | ||| ||| ||||| |||||| ||||||| ||||| || || |||||
Sbjct 13736270 GAGTTTCTCGATAATCTTGGATTTACTGAAAGACAAGAAGGCGATTTGGGACCTGTTTAT 13736211
Query 168675 GGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTGTGATACAGATTACACCGGA 168734
|| ||||||||||||||| |||||| ||| | | | ||| | ||||| | ||
Sbjct 13736210 GGTTTTCAATGGAGACATTTTGGAGCTACATACAAAGGCGTTGACGCCGATTATAGAGGT 13736151
Query 168735 CAAGGAGTAGACCAATTAAGTCAAACTATAAATACTTTACACAACAATCCGGAAAATAGA 168794
||||| | || ||||| ||| || || || | | |||||| |||
Sbjct 13736150 GAAGGAATTGATCAATTGGCCCAAGTAATTGATCAAATAAAGACCAATCCTTTTTCAAGA 13736091
Query 168795 AGAA-TATTAATTA-ATAGTTGGGATGTACCACAACTTGATAAAATGGTTCTTCCCCCTT 168852
|||| |||| ||| | ||| || | | | ||||||||||||||| | || || |
Sbjct 13736090 AGAATTATT--TTATCTGCATGGAATCCATCTGATCTTGATAAAATGGTTTTGCCTCCAT 13736033
Query 168853 GTCACACTTTAGTGCAATTTTATGT 168877
|||| ||||||| |||||||||||
Sbjct 13736032 GTCATACTTTAGCTCAATTTTATGT 13736008
Score = 102 bits (112), Expect = 1e-16
Identities = 181/256 (71%), Gaps = 16/256 (6%)
Strand=Plus/Minus
Query 193794 ATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 193853
|||| | | || |||| ||||||||| | |||||||||||| |||||| ||||||
Sbjct 5488677 ATTTATTTTGGACCAATTTATTATCAAAAGTTAAAACATATGGTTTTGGATAAGATGCAT 5488618
Query 193854 GCTAGAAGTCA--TGGACAAG-TGACTACTTTACATCGACAACCAAATTGTGGTCGTTCT 193910
|||||| ||| |||| || || | || ||| || ||||||| ||| | ||
Sbjct 5488617 GCTAGA--TCAAGAGGACCAGTTGCCGTATTGACA-CGTCAACCAACAGAGGGTAGAGCT 5488561
Query 193911 CAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCT 193970
| | ||| ||||||||||| ||||||||||| | ||| ||| || ||| |||| ||
Sbjct 5488560 CGTGATGGTGGTTTAAGATTAGGAGAAATGGAAAGAGATTGTCTTATAGCATATGGAGC- 5488502
Query 193971 ACTCAATTCT-TGAATGAAA----GAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATG 194025
||||| || | |||| || |||| || | |||||||| |||||||| ||||
Sbjct 5488501 -ATCAATGCTATTAATGGAACGGTTAATGGTT---TCTTCTGATCAATTTCAAGTTGATG 5488446
Query 194026 TTTGCACAGAATGTGG 194041
| || | | ||||||
Sbjct 5488445 TATGTTCTGTATGTGG 5488430
>seq13
Length=859544
Score = 102 bits (112), Expect = 1e-16
Identities = 142/195 (73%), Gaps = 12/195 (6%)
Strand=Plus/Minus
Query 51870 GATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGT 51929
|||| ||||| ||| |||| || | |||||| | ||||||||| |||||| || ||
Sbjct 704154 GATGATGATGTTGTTTTATTTAACCGTCAACCATCTCTTCATAAAATTTCTAT--AATGT 704097
Query 51930 TTTAAAGTTAAAA--TTCAACCAGTAAAAACATTTAA----AATGAATTTGGCTATGACT 51983
| | || ||| || |||| || ||| ||| ||||||| || ||| |
Sbjct 704096 CTCATAGAGCAAAGGTTGTTCCAGGAAGAACTTTTCGTTTTAATGAATGTGC--ATG--T 704041
Query 51984 AAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATAT 52043
| | |||| ||||||||||||||||| |||||||||||||||||| | |||||| | |||
Sbjct 704040 ACACCATACAATGCTGATTTTGATGGTGATGAAATGAATTTACATTTACCTCAAACTTAT 703981
Query 52044 GGAGCTACTGCTGAA 52058
| ||| | ||||||
Sbjct 703980 GAAGCAAAAGCTGAA 703966
>seq14
Length=507912
Score = 89.7 bits (98), Expect = 7e-13
Identities = 130/184 (71%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 51856 AAAGACAATTGATGGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAG 51915
||||||| ||| ||||||||| | | | || ||| | |||||||||||||| |||
Sbjct 422289 AAAGACATATGACTGATGGTGATATTATTGTTTTTAATCGTCAACCAACACTTCACAAAA 422230
Query 51916 CTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTGG 51975
|||| | || ||||||| || ||| ||||||| |||||| |
Sbjct 422229 TGAGTATGATGGGGCATAGAGTTAAAGTTTTACCTTGGTCAACATTTCGTATGAATCTTT 422170
Query 51976 CTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTC 52035
|| | || | | |||||||||||||||||||| |||||||||||| | ||| | ||||
Sbjct 422169 CTGTAACAACTCCTTATAATGCTGATTTTGATGGTGATGAAATGAATCTTCATTTACCTC 422110
Query 52036 AATC 52039
||||
Sbjct 422109 AATC 422106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635176528137800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |