Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 seq13 102 1e-16 seq14 89.7 7e-13 >seq2 Length=16759152 Score = 107 bits (118), Expect = 2e-18 Identities = 221/325 (68%), Gaps = 4/325 (1%) Strand=Plus/Minus Query 168555 ACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTTGGAACGATAATGGTTCTCGT 168614 ||| || |||| |||||| || || || |||||| ||||| | | || || | | Sbjct 13736330 ACTAATGCAAAGGAATTAAGTGCTAGGGGGGTTAAAATTTGGGAAGCAAACGGAAGTAGA 13736271 Query 168615 GAATTTTTAGATTTATGTGGTTTTACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTAT 168674 || ||| | ||| ||| ||||| |||||| ||||||| ||||| || || ||||| Sbjct 13736270 GAGTTTCTCGATAATCTTGGATTTACTGAAAGACAAGAAGGCGATTTGGGACCTGTTTAT 13736211 Query 168675 GGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTGTGATACAGATTACACCGGA 168734 || ||||||||||||||| |||||| ||| | | | ||| | ||||| | || Sbjct 13736210 GGTTTTCAATGGAGACATTTTGGAGCTACATACAAAGGCGTTGACGCCGATTATAGAGGT 13736151 Query 168735 CAAGGAGTAGACCAATTAAGTCAAACTATAAATACTTTACACAACAATCCGGAAAATAGA 168794 ||||| | || ||||| ||| || || || | | |||||| ||| Sbjct 13736150 GAAGGAATTGATCAATTGGCCCAAGTAATTGATCAAATAAAGACCAATCCTTTTTCAAGA 13736091 Query 168795 AGAA-TATTAATTA-ATAGTTGGGATGTACCACAACTTGATAAAATGGTTCTTCCCCCTT 168852 |||| |||| ||| | ||| || | | | ||||||||||||||| | || || | Sbjct 13736090 AGAATTATT--TTATCTGCATGGAATCCATCTGATCTTGATAAAATGGTTTTGCCTCCAT 13736033 Query 168853 GTCACACTTTAGTGCAATTTTATGT 168877 |||| ||||||| ||||||||||| Sbjct 13736032 GTCATACTTTAGCTCAATTTTATGT 13736008 Score = 102 bits (112), Expect = 1e-16 Identities = 181/256 (71%), Gaps = 16/256 (6%) Strand=Plus/Minus Query 193794 ATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 193853 |||| | | || |||| ||||||||| | |||||||||||| |||||| |||||| Sbjct 5488677 ATTTATTTTGGACCAATTTATTATCAAAAGTTAAAACATATGGTTTTGGATAAGATGCAT 5488618 Query 193854 GCTAGAAGTCA--TGGACAAG-TGACTACTTTACATCGACAACCAAATTGTGGTCGTTCT 193910 |||||| ||| |||| || || | || ||| || ||||||| ||| | || Sbjct 5488617 GCTAGA--TCAAGAGGACCAGTTGCCGTATTGACA-CGTCAACCAACAGAGGGTAGAGCT 5488561 Query 193911 CAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCT 193970 | | ||| ||||||||||| ||||||||||| | ||| ||| || ||| |||| || Sbjct 5488560 CGTGATGGTGGTTTAAGATTAGGAGAAATGGAAAGAGATTGTCTTATAGCATATGGAGC- 5488502 Query 193971 ACTCAATTCT-TGAATGAAA----GAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATG 194025 ||||| || | |||| || |||| || | |||||||| |||||||| |||| Sbjct 5488501 -ATCAATGCTATTAATGGAACGGTTAATGGTT---TCTTCTGATCAATTTCAAGTTGATG 5488446 Query 194026 TTTGCACAGAATGTGG 194041 | || | | |||||| Sbjct 5488445 TATGTTCTGTATGTGG 5488430 >seq13 Length=859544 Score = 102 bits (112), Expect = 1e-16 Identities = 142/195 (73%), Gaps = 12/195 (6%) Strand=Plus/Minus Query 51870 GATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGT 51929 |||| ||||| ||| |||| || | |||||| | ||||||||| |||||| || || Sbjct 704154 GATGATGATGTTGTTTTATTTAACCGTCAACCATCTCTTCATAAAATTTCTAT--AATGT 704097 Query 51930 TTTAAAGTTAAAA--TTCAACCAGTAAAAACATTTAA----AATGAATTTGGCTATGACT 51983 | | || ||| || |||| || ||| ||| ||||||| || ||| | Sbjct 704096 CTCATAGAGCAAAGGTTGTTCCAGGAAGAACTTTTCGTTTTAATGAATGTGC--ATG--T 704041 Query 51984 AAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATAT 52043 | | |||| ||||||||||||||||| |||||||||||||||||| | |||||| | ||| Sbjct 704040 ACACCATACAATGCTGATTTTGATGGTGATGAAATGAATTTACATTTACCTCAAACTTAT 703981 Query 52044 GGAGCTACTGCTGAA 52058 | ||| | |||||| Sbjct 703980 GAAGCAAAAGCTGAA 703966 >seq14 Length=507912 Score = 89.7 bits (98), Expect = 7e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 51856 AAAGACAATTGATGGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAG 51915 ||||||| ||| ||||||||| | | | || ||| | |||||||||||||| ||| Sbjct 422289 AAAGACATATGACTGATGGTGATATTATTGTTTTTAATCGTCAACCAACACTTCACAAAA 422230 Query 51916 CTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTGG 51975 |||| | || ||||||| || ||| ||||||| |||||| | Sbjct 422229 TGAGTATGATGGGGCATAGAGTTAAAGTTTTACCTTGGTCAACATTTCGTATGAATCTTT 422170 Query 51976 CTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTC 52035 || | || | | |||||||||||||||||||| |||||||||||| | ||| | |||| Sbjct 422169 CTGTAACAACTCCTTATAATGCTGATTTTGATGGTGATGAAATGAATCTTCATTTACCTC 422110 Query 52036 AATC 52039 |||| Sbjct 422109 AATC 422106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635176528137800